Evidence map›Paper›PMID 24699545›Full record

ArticleDevelopmental biology2014

The Period protein homolog LIN-42 negatively regulates microRNA biogenesis in C. elegans.

Priscilla M Van Wynsberghe, Emily F Finnegan, Thomas Stark, Evan P Angelus, Kathryn E Homan, Gene W Yeo, Amy E Pasquinelli

Abstract read
In one paragraph

Article in Developmental biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
0.7field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
  2. A molecular timer couples organism-wide temporal identity to developmental checkpoints.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  3. A developmental timer coordinates organism-wide microRNA transcription.bioRxiv : the preprint server for biology · 2026
    Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Biomedicines · 2021
    Review
  13. The multifaceted roles of microRNAs in differentiation.Current opinion in cell biology · 2020
    Review
  14. Article
  15. Trans-splicing of theDevelopment (Cambridge, England) · 2019
    Article
  16. The Doubletime HomologG3 (Bethesda, Md.) · 2018
    Article
  17. Article
  18. Article
  19. Article
  20. Caenorhabditis elegans period homolog lin-42 regulates the timing of heterochronic miRNA expression.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Priscilla M Van WynsbergheDivision of Biology, University of California at San Diego, La Jolla, CA 92093-0349, USA; Department of Biology, Colgate University, Hamilton, NY 13323, USA. Electronic address: pvanwynsberghe@colgate.edu.
Emily F FinneganDivision of Biology, University of California at San Diego, La Jolla, CA 92093-0349, USA.
Thomas StarkDivision of Biology, University of California at San Diego, La Jolla, CA 92093-0349, USA; Department of Cellular and Molecular Medicine, Institute for Genomic Medicine, Stem Cell Program, University of California at San Diego, Sanford Consortium for Regenerative Medicine, 2880 Torrey Pines Scenic Drive, La Jolla, CA 92037, USA.
Evan P AngelusDepartment of Biology, Colgate University, Hamilton, NY 13323, USA.
Kathryn E HomanDepartment of Biology, Colgate University, Hamilton, NY 13323, USA.
Gene W YeoDepartment of Cellular and Molecular Medicine, Institute for Genomic Medicine, Stem Cell Program, University of California at San Diego, Sanford Consortium for Regenerative Medicine, 2880 Torrey Pines Scenic Drive, La Jolla, CA 92037, USA.
Amy E PasquinelliDivision of Biology, University of California at San Diego, La Jolla, CA 92093-0349, USA. Electronic address: apasquinelli@ucsd.edu.
University of California San Diego · USColgate University · USSanford Consortium for Regenerative Medicine · US

Funding

VIRAL MALIGNANCYP30CA023100 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DIANE M SIMEONE · 1985 to 2026
$124.9M
Functional RNA elements in the human genomeR01HG004659 · NHGRI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Kevin Daniel Corbett, Eugene Wei-Ming Yeo · 2008 to 2026
$12.4M
Training Program in Basic Clinical GeneticsT32GM008666 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HAMILTON, BRUCE A · 1998 to 2021
$8.6M
Role of Argonaute in miRNA biogenesis and functionR01GM071654 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI PASQUINELLI, AMY E. · 2004 to 2017
$4.0M
Defining the messenger RNP code in the brainR01NS075449 · NINDS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI YEO, EUGENE WEI-MING · 2012 to 2016
$3.0M
Examining a novel post-transcriptional regulator of general miRNA biogenesisF32GM087004 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI VAN WYNSBERGHE, PRISCILLA · 2009 to 2010
$98k
NCI NIH HHS P30 CA023100NHGRI NIH HHS R01 HG004659NIGMS NIH HHS F32 GM087004NIGMS NIH HHS F32GM087004NIGMS NIH HHS GM071654NIGMS NIH HHS R01 GM071654NIGMS NIH HHS T32 GM008666NIGMS NIH HHS T32GM008666NINDS NIH HHS R01 NS075449NINDS NIH HHS R01NS075449
6 · The paper itself

Abstract

MicroRNAs (miRNAs) are small RNAs that post-transcriptionally regulate gene expression in many multicellular organisms. They are encoded in the genome and transcribed into primary (pri-) miRNAs before two processing steps that ultimately produce the mature miRNA. In order to generate the appropriate amount of a particular miRNA in the correct location at the correct time, proper regulation of miRNA biogenesis is essential. Here we identify the Period protein homolog LIN-42 as a new regulator of miRNA biogenesis in Caenorhabditis elegans. We mapped a spontaneous suppressor of the normally lethal let-7(n2853) allele to the lin-42 gene. Mutations in this allele (ap201) or a second lin-42 allele (n1089) caused increased mature let-7 miRNA levels at most time points when mature let-7 miRNA is normally expressed. Levels of pri-let-7 and a let-7 transcriptional reporter were also increased in lin-42(n1089) worms. These results indicate that LIN-42 normally represses pri-let-7 transcription and thus the accumulation of let-7 miRNA. This inhibition is not specific to let-7, as pri- and mature levels of lin-4 and miR-35 were also increased in lin-42 mutants. Furthermore, small RNA-seq analysis showed widespread increases in the levels of mature miRNAs in lin-42 mutants. Thus, we propose that the period protein homolog LIN-42 is a global regulator of miRNA biogenesis.

Indexed as

AnimalsBlotting, NorthernCaenorhabditis elegansCaenorhabditis elegans ProteinsCrosses, GeneticGene Expression Regulation, DevelopmentalMicroRNAsMutationOligonucleotidesTranscription FactorsCaenorhabditis elegans Proteinslet-7 microRNA, C elegansLIN-42 protein, C eleganslin-4 microRNA, C elegansMicroRNAsMIRN35 microRNA, C elegansOligonucleotidesTranscription FactorsC. elegansLet-7Lin-42MicroRNAPeriod

Identifiers

PMID24699545
PMCPMC4077587
OpenAlexW1977037548

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.