Evidence map›Paper›PMID 24699068›Full record

ArticlePLoS genetics2014

A LINE-1 insertion in DLX6 is responsible for cleft palate and mandibular abnormalities in a canine model of Pierre Robin sequence.

Zena T Wolf, Elizabeth J Leslie, Boaz Arzi, Kartika Jayashankar, Nili Karmi, Zhonglin Jia, Douglas J Rowland, Amy Young, Noa Safra, Saundra Sliskovic and 3 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
6.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 58 citations in OpenAlex.

  1. Trial
  2. Article
  3. Genomic analyses identify 15 risk loci and revealProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
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  8. Long-read assembly of a Great Dane genome highlights the contribution of GC-rich sequence and mobile elements to canine genomes.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  9. Article
  10. Review
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  12. Article
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  15. Article
  16. Zebrafish models of orofacial clefts.Developmental dynamics : an official publication of the American Association of Anatomists · 2017
    Review
  17. Article
  18. Congenital Malformations in River Buffalo (Bubalus bubalis).Animals : an open access journal from MDPI · 2017
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 3 countries.

Zena T WolfDepartment of Population Health and Reproduction, School of Veterinary Medicine, University of California, Davis, Davis, California, United States of America.
Elizabeth J LeslieDepartment of Pediatrics, University of Iowa, Iowa City, Iowa, United States of America.
Boaz ArziDepartment of Surgical and Radiological Sciences, School of Veterinary Medicine, University of California, Davis, Davis, California, United States of America.
Kartika JayashankarDepartment of Population Health and Reproduction, School of Veterinary Medicine, University of California, Davis, Davis, California, United States of America.
Nili KarmiDepartment of Population Health and Reproduction, School of Veterinary Medicine, University of California, Davis, Davis, California, United States of America.
Zhonglin JiaDepartment of Pediatrics, University of Iowa, Iowa City, Iowa, United States of America; State Key Laboratory of Oral Diseases, West China Hospital of Stomatology, Sichuan University, Chengdu, China; Department of Cleft Lip and Palate Surgery, West China Hospital of Stomatology, Sichuan University, Chengdu, China.
Douglas J RowlandCenter for Molecular and Genomic Imaging, University of California, Davis, Davis, California, United States of America.
Amy YoungDepartment of Animal Science, University of California, Davis, Davis, California, United States of America.
Noa SafraDepartment of Population Health and Reproduction, School of Veterinary Medicine, University of California, Davis, Davis, California, United States of America.
Saundra SliskovicDepartment of Population Health and Reproduction, School of Veterinary Medicine, University of California, Davis, Davis, California, United States of America.
Jeffrey C MurrayDepartment of Pediatrics, University of Iowa, Iowa City, Iowa, United States of America.
Claire M WadeFaculty of Veterinary Science, University of Sydney, Sydney, New South Wales, Australia.
Danika L BannaschDepartment of Population Health and Reproduction, School of Veterinary Medicine, University of California, Davis, Davis, California, United States of America.
University of California, Davis · USUniversity of Iowa · USSichuan University · CNUniversity of Sydney · AU

Funding

FaceBase Management and Coordination HubU01DE020057 · NIDCR · UNIVERSITY OF IOWA · PI MARAZITA, MARY L., MURRAY, JEFFREY C · 2009 to 2014
$8.9M
PREDOCTORAL TRAINING PROGRAM IN GENETICST32GM008629 · NIGMS · UNIVERSITY OF IOWA · PI EBERL, DANIEL F · 1997 to 2021
$4.1M
Molecular characterization of novel loci for orofacial clefting using canine modeR01DE022532 · NIDCR · UNIVERSITY OF CALIFORNIA AT DAVIS · PI BANNASCH, DANIKA L · 2011 to 2014
$2.1M
MOLECULAR GENETIC EPIDEMIOLOGY OF CLEFT LIP AND PALATER01DE008559 · NIDCR · UNIVERSITY OF IOWA · PI MURRAY, JEFFREY C · 1988 to 2003
$1.5M
NIDCR NIH HHS R01 DE008559NIDCR NIH HHS R01 DE022532NIDCR NIH HHS R01DE022532NIDCR NIH HHS R01DE08559NIDCR NIH HHS U01 DE020057NIGMS NIH HHS T32 GM008629
6 · The paper itself

Abstract

Cleft palate (CP) is one of the most commonly occurring craniofacial birth defects in humans. In order to study cleft palate in a naturally occurring model system, we utilized the Nova Scotia Duck Tolling Retriever (NSDTR) dog breed. Micro-computed tomography analysis of CP NSDTR craniofacial structures revealed that these dogs exhibit defects similar to those observed in a recognizable subgroup of humans with CP: Pierre Robin Sequence (PRS). We refer to this phenotype in NSDTRs as CP1. Individuals with PRS have a triad of birth defects: shortened mandible, posteriorly placed tongue, and cleft palate. A genome-wide association study in 14 CP NSDTRs and 72 unaffected NSDTRs identified a significantly associated region on canine chromosome 14 (24.2 Mb-29.3 Mb; p(raw )= 4.64 × 10(-15)). Sequencing of two regional candidate homeobox genes in NSDTRs, distal-less homeobox 5 (DLX5) and distal-less homeobox 6 (DLX6), identified a 2.1 kb LINE-1 insertion within DLX6 in CP1 NSDTRs. The LINE-1 insertion is predicted to insert a premature stop codon within the homeodomain of DLX6. This prompted the sequencing of DLX5 and DLX6 in a human cohort with CP, where a missense mutation within the highly conserved DLX5 homeobox of a patient with PRS was identified. This suggests the involvement of DLX5 in the development of PRS. These results demonstrate the power of the canine animal model as a genetically tractable approach to understanding naturally occurring craniofacial birth defects in humans.

Indexed as

AnimalsCleft PalateDogsGene FrequencyGenes, HomeoboxGenome-Wide Association StudyHomeodomain ProteinsHumansLong Interspersed Nucleotide ElementsMandibleMutation, MissensePhenotypePierre Robin SyndromePolymorphism, Single NucleotideHomeodomain Proteins

Identifiers

PMID24699068
PMCPMC3974639
OpenAlexW2078686569

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.