Evidence map›Paper›PMID 24698179›Full record

ArticleThe FEBS journal2014

Structural and functional diversity of metalloproteinases encoded by the Bacteroides fragilis pathogenicity island.

Sergey A Shiryaev, Alexander E Aleshin, Norihito Muranaka, Muskan Kukreja, David A Routenberg, Albert G Remacle, Robert C Liddington, Piotr Cieplak, Igor A Kozlov, Alex Y Strongin

Open access · bronzeAbstract readEditorial
In one paragraph

Article in The FEBS journal, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 22 citations in OpenAlex.

  1. Comparative genomic analysis ofMicrobiology spectrum · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Sergey A ShiryaevSanford-Burnham Medical Research Institute, La Jolla, CA, USA.
Alexander E Aleshin
Norihito Muranaka
Muskan Kukreja
David A Routenberg
Albert G Remacle
Robert C Liddington
Piotr Cieplak
Igor A Kozlov
Alex Y Strongin
Sanford Burnham Prebys Medical Discovery Institute · USPrognosys Biosciences (United States) · US

Funding

Proteolysis of Myelin as a Source of Neuropathic PainR01DE022757 · NIDCR · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SHUBAYEV, VERONICA · 2012 to 2022
$7.3M
METALLOPROTEINASES IN TUMOR NEOVASCULARIZATIONR01CA083017 · NCI · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI STRONGIN, ALEX Y · 1999 to 2014
$3.8M
MINOS (Macromolecular Insights on Nucleic acids Optimized by Scattering)R01GM105404 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI TAINER, JOHN A. · 2012 to 2015
$2.1M
High-Throughput System for Protease Activity ProfilingR44GM085884 · NIGMS · PROGNOSYS BIOSCIENCES, INC. · PI KOZLOV, IGOR A. · 2011 to 2012
$2.1M
Biochemistry of MT1-MMP activation in malignancyR01CA157328 · NCI · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI STRONGIN, ALEX Y · 2011 to 2015
$1.9M
Proteolysis in silico: statistics, structural chemistry, and biologyR01GM098835 · NIGMS · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI CIEPLAK, PIOTR · 2011 to 2014
$1.5M
NCI NIH HHS R01 CA083017NCI NIH HHS R01 CA157328NCI NIH HHS R01CA157328NCI NIH HHS R01CA83017NIDCR NIH HHS R01 DE022757NIDCR NIH HHS R01DE022757NIGMS NIH HHS R01 GM098835NIGMS NIH HHS R01GM098835NIGMS NIH HHS R01 GM105404NIGMS NIH HHS R44 GM085884NIGMS NIH HHS R44GM085884
6 · The paper itself

Abstract

Bacteroides fragilis causes the majority of anaerobic infections in humans. The presence of a pathogenicity island in the genome discriminates pathogenic and commensal B. fragilis strains. The island encodes metalloproteinase II (MPII), a potential virulence protein, and one of three homologous fragilysin isozymes (FRA; also termed B. fragilis toxin or BFT). Here, we report biochemical data on the structural-functional characteristics of the B. fragilis pathogenicity island proteases by reporting the crystal structure of MPII at 2.13 Å resolution, combined with detailed characterization of the cleavage preferences of MPII and FRA3 (as a representative of the FRA isoforms), identified using a high-throughput peptide cleavage assay with 18 583 substrate peptides. We suggest that the evolution of the MPII catalytic domain can be traced to human and archaebacterial proteinases, whereas the prodomain fold is a feature specific to MPII and FRA. We conclude that the catalytic domain of both MPII and FRA3 evolved differently relative to the prodomain, and that the prodomain evolved specifically to fit the B. fragilis pathogenicity. Overall, our data provide insights into the evolution of cleavage specificity and activation mechanisms in the virulent metalloproteinases.

Indexed as

Bacteroides fragilisGenomic IslandsMetalloproteasesMetalloproteasesBacteroides fragilismetalloproteinasesmicrobiomepathogenicitystructure

Identifiers

PMID24698179
PMCPMC4047133
OpenAlexW2093987066

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.