Evidence map›Paper›PMID 24696024›Full record

ArticleJournal of clinical microbiology2014

Head-to-head comparison of second-generation nucleic acid amplification tests for detection of Chlamydia trachomatis and Neisseria gonorrhoeae on urine samples from female subjects and self-collected vaginal swabs.

Max Chernesky, Dan Jang, Jodi Gilchrist, Todd Hatchette, André Poirier, Jean-Frederic Flandin, Marek Smieja, Sam Ratnam

Open access · bronzeAbstract readComparative StudyEvaluation Study
In one paragraph

Article in Journal of clinical microbiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed, 2 pooled it
3.9field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 2 syntheses or guidelines pooled it, 49 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Trial
  4. Surveillance forMicrobiology spectrum · 2025
    Article
  5. Review
  6. Article
  7. Screening for chlamydia and gonorrhea in primary care in populations with low prevalence.CMAJ : Canadian Medical Association journal = journal de l'Association medicale canadienne · 2021
    Article
  8. Article
  9. Article
  10. Precision of the Abbott RealTime Assay in the Detection of OcularThe American journal of tropical medicine and hygiene · 2020
    Article
  11. Infectious diseases in obstetrics and gynecology · 2020
    Article
  12. The Finnish New Variant ofMicroorganisms · 2019
    Article
  13. Article
  14. Article
  15. Diagnostic Molecular Microbiology: A 2018 Snapshot.Clinics in laboratory medicine · 2018
    Review
  16. Article
  17. Article
  18. Detection ofThe Indian journal of medical research · 2017
    Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 6 institutions in 1 country.

Max CherneskySt. Joseph's Healthcare/McMaster University, Hamilton, Ontario, Canada chernesk@mcmaster.ca.
Dan JangSt. Joseph's Healthcare/McMaster University, Hamilton, Ontario, Canada.
Jodi GilchristSt. Joseph's Healthcare/McMaster University, Hamilton, Ontario, Canada.
Todd HatchetteQueen Elizabeth II Health Sciences Centre, Dalhousie University, Halifax, Nova Scotia, Canada.
André PoirierCentre de santé et de services sociaux de Trois-Rivières, Trois-Rivières, Quebec, Canada.
Jean-Frederic FlandinPublic Health Laboratory, St. John's, Newfoundland and Labrador, Canada.
Marek SmiejaSt. Joseph's Healthcare/McMaster University, Hamilton, Ontario, Canada.
Sam RatnamDivision of Community Health and Humanities, Memorial University, St. John's, Newfoundland and Labrador, Canada Department of Oncology, McGill University, Montreal, Quebec, Canada.
McMaster University · CASt. Joseph’s Healthcare Hamilton · CACentre intégré universitaire de santé et de services sociaux de la Mauricie-et-du-Centre-du-Québec · CAMemorial University of Newfoundland · CAQueen Elizabeth II Health Sciences Centre · CASt. John’s Health Sciences Centre · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In a comparison of 4 second-generation nucleic acid amplification tests performed with self-collected vaginal swab (SCVS) and first-void urine (FVU) specimens from 575 women, SCVS specimens indicated more infections than did FVU specimens in all assays. The prevalence rates were 9% (53/575 patients) for Chlamydia trachomatis and 2% (11/575 patients) for Neisseria gonorrhoeae. The clinical sensitivities for testing SCVS specimens for C. trachomatis were 98.1% on a Tigris system and 96.2% on a Panther system for the Aptima Combo 2 assay (Hologic Gen-Probe), 98.0% for the RealTime CT/NG assay on an m2000 instrument (Abbott), 90.6% for the ProbeTec CT/GC Q(x) assay on the Viper system (Becton Dickinson), and 84.6% for the cobas CT/NG assay on the cobas 4800 platform (Roche). Clinical sensitivities for C. trachomatis in FVU specimens were 88.7% (Tigris) and 88.0% (Panther) for the Aptima Combo 2 assay, 76.9% for the RealTime CT/NG assay, 75.5% for the ProbeTec CT/GC Q(x) assay, and 81.1% for the cobas CT/NG assay. Clinical sensitivities of the assays for N. gonorrhoeae, with limited positive results, ranged from 63.6% to 100%. Specificities for both infections ranged from 98.4 to 100%. Differences in analytical sensitivities and levels of molecular targets in clinical samples but not inhibitors of amplification may explain the differences in clinical sensitivities.

Indexed as

Chlamydia InfectionsChlamydia trachomatisFemaleGonorrheaHeadHumansMolecular Diagnostic TechniquesNeisseria gonorrhoeaeNucleic Acid Amplification TechniquesSelf AdministrationSensitivity and SpecificitySpecimen HandlingUrineVagina

Identifiers

PMID24696024
PMCPMC4097753
OpenAlexW2081372128

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.