Evidence map›Paper›PMID 24695868›Full record

ArticleJournal of biomedical optics2014

Parallelized multi-graphics processing unit framework for high-speed Gabor-domain optical coherence microscopy.

Patrice Tankam, Anand P Santhanam, Kye-Sung Lee, Jungeun Won, Cristina Canavesi, Jannick P Rolland

Abstract read
In one paragraph

Article in Journal of biomedical optics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
  3. Ten Years of Gabor-Domain Optical Coherence Microscopy.Applied sciences (Basel, Switzerland) · 2019
    Article
  4. Article
  5. Optical Assessment of Soft Contact Lens Edge-Thickness.Optometry and vision science : official publication of the American Academy of Optometry · 2016
    Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Patrice TankamUniversity of Rochester, The Institute of Optics, 275 Hutchinson Road, Rochester, New York 14627bUniversity of Rochester, Center for Visual Science, 601 Elmwood Avenue, Rochester, New York 14642.
Anand P SanthanamUniversity of California, Department of Radiation Oncology, Los Angeles, 200 Medical plaza drive, Los Angeles, California 90095.
Kye-Sung LeeUniversity of Rochester, The Institute of Optics, 275 Hutchinson Road, Rochester, New York 14627dKorea Basic Science Institute, Center for Analytical Instrumentation Development, Daejeon 305-806, South Korea.
Jungeun WonUniversity of Rochester, Department of Biomedical Engineering, 275 Hutchinson Road, Rochester, New York 14627.
Cristina CanavesiLighTopTech Corp., 150 Lucius Gordon Dr., Ste 115, West Henrietta, New York 14586.
Jannick P RollandUniversity of Rochester, The Institute of Optics, 275 Hutchinson Road, Rochester, New York 14627bUniversity of Rochester, Center for Visual Science, 601 Elmwood Avenue, Rochester, New York 14642eUniversity of Rochester, Department of Biomedical Engineerin.

Funding

VISUAL SCIENCET32EY007125 · NEI · UNIVERSITY OF ROCHESTER · PI Krystel R Huxlin, Duje Tadin · 1990 to 2026
$7.1M
NEI NIH HHS EY007125NEI NIH HHS T32 EY007125
6 · The paper itself

Abstract

Gabor-domain optical coherence microscopy (GD-OCM) is a volumetric high-resolution technique capable of acquiring three-dimensional (3-D) skin images with histological resolution. Real-time image processing is needed to enable GD-OCM imaging in a clinical setting. We present a parallelized and scalable multi-graphics processing unit (GPU) computing framework for real-time GD-OCM image processing. A parallelized control mechanism was developed to individually assign computation tasks to each of the GPUs. For each GPU, the optimal number of amplitude-scans (A-scans) to be processed in parallel was selected to maximize GPU memory usage and core throughput. We investigated five computing architectures for computational speed-up in processing 1000×1000 A-scans. The proposed parallelized multi-GPU computing framework enables processing at a computational speed faster than the GD-OCM image acquisition, thereby facilitating high-speed GD-OCM imaging in a clinical setting. Using two parallelized GPUs, the image processing of a 1×1×0.6  mm3 skin sample was performed in about 13 s, and the performance was benchmarked at 6.5 s with four GPUs. This work thus demonstrates that 3-D GD-OCM data may be displayed in real-time to the examiner using parallelized GPU processing.

Indexed as

Computer SystemsAlgorithmsComputer GraphicsComputersHumansImage Processing, Computer-AssistedImaging, Three-DimensionalMicroscopyRefractometrySkinSoftwareTomography, Optical Coherence

Identifiers

PMID24695868
PMCPMC4019421

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.