Evidence map›Paper›PMID 24695740›Full record

ArticleThe Journal of biological chemistry2014

Runx1 regulation of Pu.1 corepressor/coactivator exchange identifies specific molecular targets for leukemia differentiation therapy.

Xiaorong Gu, Zhenbo Hu, Quteba Ebrahem, John S Crabb, Reda Z Mahfouz, Tomas Radivoyevitch, John W Crabb, Yogen Saunthararajah

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed, 1 pooled it
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 1 synthesis or guideline pooled it, 40 citations in OpenAlex.

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  16. The Genome-Wide Binding Profile for Human RE1 Silencing Transcription Factor Unveils a Unique Genetic Circuitry in Hippocampus.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Xiaorong GuFrom the Department of Translational Hematology and Oncology Research, Taussig Cancer Institute, and.
Zhenbo HuFrom the Department of Translational Hematology and Oncology Research, Taussig Cancer Institute, and.
Quteba EbrahemFrom the Department of Translational Hematology and Oncology Research, Taussig Cancer Institute, and.
John S CrabbDepartment of Ophthalmic Research, Cole Eye Institute, Cleveland Clinic, Cleveland, Ohio 44195 and.
Reda Z MahfouzFrom the Department of Translational Hematology and Oncology Research, Taussig Cancer Institute, and.
Tomas Radivoyevitchthe Department of Epidemiology and Biostatistics, Case Western Reserve University, Cleveland, Ohio 44106.
John W CrabbDepartment of Ophthalmic Research, Cole Eye Institute, Cleveland Clinic, Cleveland, Ohio 44195 and.
Yogen SaunthararajahFrom the Department of Translational Hematology and Oncology Research, Taussig Cancer Institute, and saunthy@ccf.org.
Cancer Institute (WIA) · INCleveland Clinic · USCase Western Reserve University · US

Funding

CTSA INFRASTRUCTURE FOR PEDIATRIC RESEARCHUL1RR024989 · NCRR · CASE WESTERN RESERVE UNIVERSITY · PI DAVIS, PAMELA B · 2007 to 2011
$53.7M
Clinical and Translational Science Collaborative of ClevelandUL1TR000439 · NCATS · CASE WESTERN RESERVE UNIVERSITY · PI KONSTAN, MICHAEL W. · 2012 to 2016
$50.0M
Optimizing decitabine regimen + formulation for nonDNA damaging DNMT1 depletionR01CA138858 · NCI · CLEVELAND CLINIC LERNER COM-CWRU · PI SAUNTHARARAJAH, YOGEN · 2009 to 2013
$1.6M
NCATS NIH HHS UL1 TR000439NCI NIH HHS R01 CA138858NCI NIH HHS R01CA138858NCRR NIH HHS UL1 RR024989NCRR NIH HHS UL1RR024989
6 · The paper itself

Abstract

Gene activation requires cooperative assembly of multiprotein transcription factor-coregulator complexes. Disruption to cooperative assemblage could underlie repression of tumor suppressor genes in leukemia cells. Mechanisms of cooperation and its disruption were therefore examined for PU.1 and RUNX1, transcription factors that cooperate to activate hematopoietic differentiation genes. PU.1 is highly expressed in leukemia cells, whereas RUNX1 is frequently inactivated by mutation or translocation. Thus, coregulator interactions of Pu.1 were examined by immunoprecipitation coupled with tandem mass spectrometry/Western blot in wild-type and Runx1-deficient hematopoietic cells. In wild-type cells, the NuAT and Baf families of coactivators coimmunoprecipitated with Pu.1. Runx1 deficiency produced a striking switch to Pu.1 interaction with the Dnmt1, Sin3A, Nurd, CoRest, and B-Wich corepressor families. Corepressors of the Polycomb family, which are frequently inactivated by mutation or deletion in myeloid leukemia, did not interact with Pu.1. The most significant gene ontology association of Runx1-Pu.1 co-bound genes was with macrophages, therefore, functional consequences of altered corepressor/coactivator exchange were examined at Mcsfr, a key macrophage differentiation gene. In chromatin immunoprecipitation analyses, high level Pu.1 binding to the Mcsfr promoter was not decreased by Runx1 deficiency. However, the Pu.1-driven shift from histone repression to activation marks at this locus, and terminal macrophage differentiation, were substantially diminished. DNMT1 inhibition, but not Polycomb inhibition, in RUNX1-translocated leukemia cells induced terminal differentiation. Thus, RUNX1 and PU.1 cooperate to exchange corepressors for coactivators, and the specific corepressors recruited to PU.1 as a consequence of RUNX1 deficiency could be rational targets for leukemia differentiation therapy.

Indexed as

AnimalsBlotting, WesternCell DifferentiationCells, CulturedChromatin ImmunoprecipitationCore Binding Factor Alpha 2 SubunitCo-Repressor ProteinsGene Expression ProfilingHEK293 CellsHumansLeukemiaMacrophagesMiceMice, KnockoutMutationOligonucleotide Array Sequence AnalysisCore Binding Factor Alpha 2 SubunitCo-Repressor ProteinsProto-Oncogene ProteinsProto-Oncogene Protein Spi-1Trans-ActivatorsChromatin Modifying EnzymesEnhanceosomeEnzyme InhibitorsEpigeneticsLeukemogenesisProtein ComplexesProtein InteractomeTranscription CoactivatorsTranscription RegulationTranscription Repressor

Identifiers

PMID24695740
PMCPMC4031539
OpenAlexW2082070389

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.