Evidence map›Paper›PMID 24695540›Full record

ArticlePloS one2014

The gut of geographically disparate Ciona intestinalis harbors a core microbiota.

Larry J Dishaw, Jaime Flores-Torres, Simon Lax, Kristina Gemayel, Brittany Leigh, Daniela Melillo, M Gail Mueller, Lenina Natale, Ivana Zucchetti, Rosaria De Santis and 3 more

Abstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 67 papers.

0numbers the graph read from it
0cells of the map it votes in
67citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

67 citing papers in PubMed.

  1. Facultative mutualism betweenISME communications · 2026
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  9. Microbiota Dysbiosis inMicroorganisms · 2025
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  19. Cultivation of gut microorganisms of the marine ascidianMarine life science & technology · 2022
    Article
  20. Article

7 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Larry J DishawDivision of Molecular Genetics, Department of Pediatrics, University of South Florida College of Medicine, USF Health, St. Petersburg, Florida, United States of America.
Jaime Flores-TorresDivision of Neonatology, University of South Florida College of Medicine, USF Health, St. Petersburg, Florida, United States of America.
Simon LaxDepartment of Ecology and Evolution, University of Chicago, Chicago, Illinois, United States of America.
Kristina GemayelPost-Baccalaureate Program in Interdisciplinary Medical Sciences, University of South Florida College of Medicine, Tampa, Florida, United States of America.
Brittany LeighCollege of Marine Sciences, University of South Florida, St. Petersburg, Florida, United States of America.
Daniela MelilloDepartment of Animal Physiology and Evolution, Stazione Zoologica Anton Dohrn, Naples, Italy.
M Gail MuellerDepartment of Molecular Genetics, All Children's Hospital, St. Petersburg, Florida, United States of America.
Lenina NataleDepartment of Animal Physiology and Evolution, Stazione Zoologica Anton Dohrn, Naples, Italy.
Ivana ZucchettiDepartment of Animal Physiology and Evolution, Stazione Zoologica Anton Dohrn, Naples, Italy.
Rosaria De SantisDepartment of Animal Physiology and Evolution, Stazione Zoologica Anton Dohrn, Naples, Italy.
Maria Rosaria PintoDepartment of Animal Physiology and Evolution, Stazione Zoologica Anton Dohrn, Naples, Italy.
Gary W LitmanDivision of Molecular Genetics, Department of Pediatrics, University of South Florida College of Medicine, USF Health, St. Petersburg, Florida, United States of America.
Jack A GilbertDepartment of Ecology and Evolution, University of Chicago, Chicago, Illinois, United States of America; Biosciences Division, Argonne National Laboratories, University of Chicago, Illinois, United States of America.

Funding

EVOLUTIONARY ORIGINS OF IMMUNE-TYPE GENESR01AI023338 · NIAID · UNIVERSITY OF SOUTH FLORIDA · PI LITMAN, GARY WILLIAM · 1985 to 2014
$3.6M
EARLY EVOLUTIONARY ORIGINS OF IMMUNOGLOBULIN GENESR37AI023338 · NIAID · UNIVERSITY OF SOUTH FLORIDA · PI LITMAN, GARY W · 1995 to 2003
$1.6M
Evolutionary Origins of Immune-Type GenesR56AI023338 · NIAID · UNIVERSITY OF SOUTH FLORIDA · PI LITMAN, GARY WILLIAM · 2009 to 2009
$77k
NIAID NIH HHS AI23338NIAID NIH HHS R01 AI023338NIAID NIH HHS R37 AI023338NIAID NIH HHS R56 AI023338
6 · The paper itself

Abstract

It is now widely understood that all animals engage in complex interactions with bacteria (or microbes) throughout their various life stages. This ancient exchange can involve cooperation and has resulted in a wide range of evolved host-microbial interdependencies, including those observed in the gut. Ciona intestinalis, a filter-feeding basal chordate and classic developmental model that can be experimentally manipulated, is being employed to help define these relationships. Ciona larvae are first exposed internally to microbes upon the initiation of feeding in metamorphosed individuals; however, whether or not these microbes subsequently colonize the gut and whether or not Ciona forms relationships with specific bacteria in the gut remains unknown. In this report, we show that the Ciona gut not only is colonized by a complex community of bacteria, but also that samples from three geographically isolated populations reveal striking similarity in abundant operational taxonomic units (OTUs) consistent with the selection of a core community by the gut ecosystem.

Indexed as

AnimalsBacteriaCiona intestinalisEcosystemGastrointestinal TractLarvaMetagenomeMicrobiotaRNA, Ribosomal, 16SRNA, Ribosomal, 16S

Identifiers

PMID24695540
PMCPMC3973685

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.