Evidence map›Paper›PMID 24695352›Full record

Trial reportThe Journal of antimicrobial chemotherapy2014

Functional CYP2B6 variants and virologic response to an efavirenz-containing regimen in Port-au-Prince, Haiti.

David W Haas, Patrice Severe, Marc Antoine Jean Juste, Jean William Pape, Daniel W Fitzgerald

Open access · bronzeAbstract readClinical TrialRandomized Controlled Trial
In one paragraph

Trial report in The Journal of antimicrobial chemotherapy, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed, 2 pooled it
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 2 syntheses or guidelines pooled it, 18 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Association ofPharmacogenomics and personalized medicine · 2021
    Article
  5. Article
  6. Observational
  7. Observational
  8. Article
  9. PharmGKB summary: Efavirenz pathway, pharmacokinetics.Pharmacogenetics and genomics · 2015
    Review
  10. Article
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

David W HaasVanderbilt University School of Medicine, Nashville, TN, USA david.haas@vanderbilt.edu.
Patrice SevereGHESKIO Centers, Port-au-Prince, Haiti.
Marc Antoine Jean JusteGHESKIO Centers, Port-au-Prince, Haiti.
Jean William PapeGHESKIO Centers, Port-au-Prince, Haiti Weill Cornell Medical College, New York, NY, USA.
Daniel W FitzgeraldGHESKIO Centers, Port-au-Prince, Haiti Weill Cornell Medical College, New York, NY, USA.
Cornell University · USGheskio Centers · HTVanderbilt University · US

Funding

GHESKIO HIV Clinical Trial UnitUM1AI069421 · NIAID · GHESKIO CENTER · PI JEAN WILLIAM PAPE · 2012 to 2026
$23.6M
TUBERCULOSIS INTERNATIONAL TRAINING AND RESEARCH PROGRAMD43TW000018 · FIC · WEILL MEDICAL COLL OF CORNELL UNIV · PI JOHNSON, WARREN DOUGLAS · 1988 to 2012
$16.1M
Pharmacogenomics of HIV TherapyR01AI077505 · NIAID · VANDERBILT UNIVERSITY MEDICAL CENTER · PI HAAS, DAVID W · 2008 to 2025
$12.3M
GHESKIO HIV Clinical Trial UnitU01AI069421 · NIAID · GHESKIO CENTER · PI PAPE, JEAN WILLIAM · 2007 to 2011
$8.4M
Haiti AIDS Research Training: Models to ImplementationU2RTW006896 · FIC · GHESKIO CENTER · PI PAPE, JEAN WILLIAM · 2004 to 2013
$5.1M
Haitian Program for Research and Training in HIV/AIDSU01AI058257 · NIAID · GHESKIO CENTER · PI PAPE, JEAN WILLIAM · 2004 to 2009
$4.2M
Antiretroviral Therapy for HIV-Infected PatientsK24AI051966 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI GULICK, ROY M. · 2003 to 2012
$1.6M
HAITI AIDS RESEARCH TRAINING: MODELS TO IMPLEMENTATIONU2RTW006901 · FIC · WEILL MEDICAL COLL OF CORNELL UNIV · PI JOHNSON, WARREN DOUGLAS · 2004 to 2009
$1.1M
A novel use of web-based software to efficiently triage pre-surgical patients basR44TR000045 · NCATS · MEDSLEUTH, INC. · PI KALAMAS, ALICIA GRUBER · 2012 to 2012
$546k
FIC NIH HHS D43 TW000018FIC NIH HHS TW-00018FIC NIH HHS TW-006896FIC NIH HHS TW-006901NCATS NIH HHS R44 TR000045NCATS NIH HHS TR-000045NIAID NIH HHS AI-077505NIAID NIH HHS AI-51966NIAID NIH HHS AI-58257NIAID NIH HHS AI-69421NIAID NIH HHS K24 AI051966NIAID NIH HHS R01 AI077505NIAID NIH HHS U01 AI058257NIAID NIH HHS U01 AI069421NIAID NIH HHS UM1 AI069421
6 · The paper itself

Abstract

objectivesEfavirenz is widely prescribed for HIV-1 infection. Three polymorphisms in CYP2B6 define plasma efavirenz trough concentration strata that vary across an ∼10-fold range. We characterized associations between human genetic polymorphisms and virologic response among participants who received efavirenz-containing regimens in a prospective clinical trial.

methodsWe genotyped 76 polymorphisms in CYP2B6 (including those that define efavirenz concentration strata), CYP2A6, CYP3A4, CYP3A5 and ABCB1 and week 48 virologic responses in 360 Haitians who initiated efavirenz-containing regimens in protocol HT 001. Associations were characterized by logistic regression analysis and Fisher's exact test.

resultsProportions with HIV-1 RNA <50 or <200 copies/mL did not differ across 10 CYP2B6 metabolizer strata. In analyses that combined strata into three metabolizer levels (extensive, intermediate and slow), the respective proportions were 0.79, 0.79 and 0.81 (<50 copies/mL cut-off) and 0.84, 0.86 and 0.87 (<200 copies/mL cut-off). Genetic associations were not identified after controlling for baseline variables or with other polymorphisms after adjusting for multiple comparisons.

conclusionsVirologic failures in HT 001 were not explained by genetic polymorphisms known to define the lowest plasma efavirenz concentration stratum.

Indexed as

AdultAlkynesAnti-HIV AgentsATP Binding Cassette Transporter, Subfamily BBenzoxazinesCyclopropanesCytochrome P-450 CYP2A6Cytochrome P-450 CYP2B6Cytochrome P-450 CYP2B6 InducersCytochrome P-450 CYP3AFemaleGenetic Association StudiesHaitiHIV-1HIV InfectionsHumansABCB1 protein, humanAlkynesAnti-HIV AgentsATP Binding Cassette Transporter, Subfamily BBenzoxazinesCyclopropanesCYP2A6 protein, humanCYP3A5 protein, humanCytochrome P-450 CYP2A6Cytochrome P-450 CYP2B6Cytochrome P-450 CYP2B6 InducersCytochrome P-450 CYP3AefavirenzReverse Transcriptase InhibitorsRNA, ViralAIDSantiretroviral therapyHIVpharmacogenomics

Identifiers

PMID24695352
PMCPMC4100704
OpenAlexW2138474459

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.