Evidence map›Paper›PMID 24695230›Full record

ArticleNature2014

Synapse elimination and learning rules co-regulated by MHC class I H2-Db.

Hanmi Lee, Barbara K Brott, Lowry A Kirkby, Jaimie D Adelson, Sarah Cheng, Marla B Feller, Akash Datwani, Carla J Shatz

Abstract read
In one paragraph

Article in Nature, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 142 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
142citing papers in PubMed, 2 pooled it
17.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

142 citing papers in PubMed, 2 syntheses or guidelines pooled it, 229 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. C4d, a high-affinity LilrB2 ligand, is elevated in Alzheimer's disease and mediates synapse pruning.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  10. Review
  11. Brain communications · 2025
    Review
  12. Activity-Dependent Synapse Refinement: From Mechanisms to Molecules.The Neuroscientist : a review journal bringing neurobiology, neurology and psychiatry · 2024
    Review
  13. Review
  14. Article
  15. Immune receptors and aging brain.Bioscience reports · 2024
    Review
  16. Review
  17. Review
  18. Review
  19. Article
  20. Article

82 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Hanmi LeeDepartments of Biology and Neurobiology and Bio-X, James H. Clark Center, 318 Campus Drive, Stanford, California 94305, USA.
Barbara K BrottDepartments of Biology and Neurobiology and Bio-X, James H. Clark Center, 318 Campus Drive, Stanford, California 94305, USA.
Lowry A KirkbyDepartment of Molecular and Cell Biology & Helen Wills Neuroscience Institute, University of California, Berkeley, California 94720, USA.
Jaimie D AdelsonDepartments of Biology and Neurobiology and Bio-X, James H. Clark Center, 318 Campus Drive, Stanford, California 94305, USA.
Sarah ChengDepartments of Biology and Neurobiology and Bio-X, James H. Clark Center, 318 Campus Drive, Stanford, California 94305, USA.
Marla B FellerDepartment of Molecular and Cell Biology & Helen Wills Neuroscience Institute, University of California, Berkeley, California 94720, USA.
Akash Datwani1] Departments of Biology and Neurobiology and Bio-X, James H. Clark Center, 318 Campus Drive, Stanford, California 94305, USA [2] Sage Bionetworks, 1100 Fairview Avenue N., Seattle, Washington 98109, USA.
Carla J ShatzDepartments of Biology and Neurobiology and Bio-X, James H. Clark Center, 318 Campus Drive, Stanford, California 94305, USA.
Stanford University · USUniversity of California, San Francisco · USSage Bionetworks · US

Funding

Training Program in Basic NeuroscienceT32MH020016 · NIMH · STANFORD UNIVERSITY · PI Justin L Gardner, Merritt C Maduke · 1997 to 2026
$16.2M
FETAL AND POSTNATAL DEVELOPMENT OF VISUAL CONNECTIONSR01EY002858 · NEI · STANFORD UNIVERSITY · PI SHATZ, CARLA J · 1985 to 2020
$9.9M
The Function of Neural Activity in Developing RetinaR01EY013528 · NEI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Marla Feller · 2002 to 2026
$8.1M
Synapse Remodeling and Neuronal MHC Class IR01MH071666 · NIMH · STANFORD UNIVERSITY · PI SHATZ, CARLA J · 2004 to 2019
$7.6M
FETAL AND POSTNATAL DEVELOPMENT OF VISUAL CONNECTIONSR37EY002858 · NEI · UNIVERSITY OF CALIFORNIA BERKELEY · PI SHATZ, CARLA J · 1992 to 2001
$689k
NEI NIH HHS EY02858NEI NIH HHS R01 EY002858NEI NIH HHS R01 EY013528NEI NIH HHS R01 EY13528NEI NIH HHS R37 EY002858NIMH NIH HHS R01 MH071666NIMH NIH HHS T32 MH020016
6 · The paper itself

Abstract

The formation of precise connections between retina and lateral geniculate nucleus (LGN) involves the activity-dependent elimination of some synapses, with strengthening and retention of others. Here we show that the major histocompatibility complex (MHC) class I molecule H2-D(b) is necessary and sufficient for synapse elimination in the retinogeniculate system. In mice lacking both H2-K(b) and H2-D(b) (K(b)D(b)(-/-)), despite intact retinal activity and basal synaptic transmission, the developmentally regulated decrease in functional convergence of retinal ganglion cell synaptic inputs to LGN neurons fails and eye-specific layers do not form. Neuronal expression of just H2-D(b) in K(b)D(b)(-/-) mice rescues both synapse elimination and eye-specific segregation despite a compromised immune system. When patterns of stimulation mimicking endogenous retinal waves are used to probe synaptic learning rules at retinogeniculate synapses, long-term potentiation (LTP) is intact but long-term depression (LTD) is impaired in K(b)D(b)(-/-) mice. This change is due to an increase in Ca(2+)-permeable AMPA (α-amino-3-hydroxy-5-methyl-4-isoxazole propionic acid) receptors. Restoring H2-D(b) to K(b)D(b)(-/-) neurons renders AMPA receptors Ca(2+) impermeable and rescues LTD. These observations reveal an MHC-class-I-mediated link between developmental synapse pruning and balanced synaptic learning rules enabling both LTD and LTP, and demonstrate a direct requirement for H2-D(b) in functional and structural synapse pruning in CNS neurons.

Indexed as

Neural PathwaysAnimalsCalciumGeniculate BodiesH-2 AntigensHistocompatibility Antigen H-2DLong-Term PotentiationLong-Term Synaptic DepressionMiceReceptors, N-Methyl-D-AspartateRetinaRetinal Ganglion CellsSynapsesSynaptic TransmissionCalciumH-2 AntigensH-2Kb protein, mouseHistocompatibility Antigen H-2DReceptors, N-Methyl-D-Aspartate

Identifiers

PMID24695230
PMCPMC4016165
OpenAlexW2050923395

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.