Evidence map›Paper›PMID 24692654›Full record

ArticleJournal of experimental botany2014

Isopentenyltransferase-1 (IPT1) knockout in Physcomitrella together with phylogenetic analyses of IPTs provide insights into evolution of plant cytokinin biosynthesis.

Ann-Cathrin Lindner, Daniel Lang, Maike Seifert, Kateřina Podlešáková, Ondřej Novák, Miroslav Strnad, Ralf Reski, Klaus von Schwartzenberg

Open access · bronzeAbstract read
In one paragraph

Article in Journal of experimental botany, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
7.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 69 citations in OpenAlex.

  1. Article
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  3. Review
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  5. Article
  6. Review
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  8. Article
  9. Cytokinin Perception in Ancient Plants beyond Angiospermae.International journal of molecular sciences · 2021
    Article
  10. Review
  11. Review
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  13. Article
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  15. Article
  16. PhytopathogenicFrontiers in microbiology · 2020
    Article
  17. Review
  18. Review
  19. Cytokinin Detection during theBiomolecules · 2019
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Ann-Cathrin LindnerUniversity of Hamburg, Biocenter Klein Flottbek, Ohnhorststraße 18, D-22609 Hamburg, Germany.
Daniel LangUniversity of Freiburg, Faculty of Biology, Plant Biotechnology, Schaenzlestr. 1, D-79104 Freiburg, Germany.
Maike SeifertUniversity of Hamburg, Biocenter Klein Flottbek, Ohnhorststraße 18, D-22609 Hamburg, Germany.
Kateřina PodlešákováLaboratory of Growth Regulators, Centre of the Region Haná for Biotechnological and Agricultural Research, Institute of Experimental Botany ASCR and Palacký University, Šlechtitelů 11, 783 71 Olomouc, Czech Republic Palacký University, Department of Biochemistry, Šlechtitelů 11, 78371 Olomouc, Czech Republic.
Ondřej NovákLaboratory of Growth Regulators, Centre of the Region Haná for Biotechnological and Agricultural Research, Institute of Experimental Botany ASCR and Palacký University, Šlechtitelů 11, 783 71 Olomouc, Czech Republic.
Miroslav StrnadLaboratory of Growth Regulators, Centre of the Region Haná for Biotechnological and Agricultural Research, Institute of Experimental Botany ASCR and Palacký University, Šlechtitelů 11, 783 71 Olomouc, Czech Republic.
Ralf ReskiUniversity of Freiburg, Faculty of Biology, Plant Biotechnology, Schaenzlestr. 1, D-79104 Freiburg, Germany FRIAS-Freiburg Institute for Advanced Studies, Freiburg, Germany BIOSS-Centre for Biological Signalling Studies, Freiburg, Germany.
Klaus von SchwartzenbergUniversity of Hamburg, Biocenter Klein Flottbek, Ohnhorststraße 18, D-22609 Hamburg, Germany klaus.von.schwartzenberg@uni-hamburg.de.
Czech Academy of Sciences, Institute of Experimental Botany · CZUniversität Hamburg · DEUniversity of Freiburg · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The moss Physcomitrella patens is part of an early divergent clade of land plants utilizing the plant hormone cytokinin for growth control. The rate-limiting step of cytokinin biosynthesis is mediated by isopentenyltransferases (IPTs), found in land plants either as adenylate-IPTs or as tRNA-IPTs. Although a dominant part of cytokinins in flowering plants are synthesized by adenylate-IPTs, the Physcomitrella genome only encodes homologues of tRNA-IPTs. This study therefore looked into the question of whether cytokinins in moss derive from tRNA exclusively. Targeted gene knockout of ipt1 (d|ipt1) along with localization studies revealed that the chloroplast-bound IPT1 was almost exclusively responsible for the A37 prenylation of tRNA in Physcomitrella. Ultra-performance liquid chromatography-tandem mass spectrometry (UPLC-MS/MS)-based cytokinin profiling demonstrated that the total amount of all free cytokinins in tissue was almost unaffected. However, the knockout plants showed increased levels of the N (6) -isopentenyladenine (iP)- and trans-zeatin (tZ)-type cytokinins, considered to provide active forms, while cis-zeatin (cZ)-type cytokinins were reduced. The data provide evidence for an additional and unexpected tRNA-independent cytokinin biosynthetic pathway in moss. Comprehensive phylogenetic analysis indicates a diversification of tRNA-IPT-like genes in bryophytes probably related to additional functions.

Indexed as

Biological EvolutionPhylogenyAlkyl and Aryl TransferasesBryopsidaChloroplastsCytokininsGene Knockout TechniquesMolecular Sequence DataPlant ProteinsPlantsRNA, Transferadenylate isopentenyltransferaseAlkyl and Aryl TransferasesCytokininsPlant ProteinsRNA, TransferBryophytecytokininisopentenyladenosineisopentenyltransferasesmosstRNA.

Identifiers

PMID24692654
PMCPMC4036517
OpenAlexW2101976527

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.