Evidence map›Paper›PMID 24692644›Full record

ArticleMicrobiology (Reading, England)2014

Randomly selected suppressor mutations in genes for NADH : quinone oxidoreductase-1, which rescue motility of a Salmonella ubiquinone-biosynthesis mutant strain.

Clive S Barker, Irina V Meshcheryakova, Toshio Sasaki, Michael C Roy, Prem Kumar Sinha, Takao Yagi, Fadel A Samatey

Abstract read
In one paragraph

Article in Microbiology (Reading, England), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.1field-weighted citation impact, top 47% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Clive S BarkerTrans-membrane Trafficking Unit, Okinawa Institute of Science and Technology, Okinawa, Japan.
Irina V MeshcheryakovaTrans-membrane Trafficking Unit, Okinawa Institute of Science and Technology, Okinawa, Japan.
Toshio SasakiResearch Support Section, Okinawa Institute of Science and Technology, Okinawa, Japan.
Michael C RoyResearch Support Section, Okinawa Institute of Science and Technology, Okinawa, Japan.
Prem Kumar SinhaDepartment of Molecular and Experimental Medicine, The Scripps Research Institute, La Jolla, CA, USA.
Takao YagiDepartment of Molecular and Experimental Medicine, The Scripps Research Institute, La Jolla, CA, USA.
Fadel A SamateyTrans-membrane Trafficking Unit, Okinawa Institute of Science and Technology, Okinawa, Japan.
Okinawa Institute of Science and Technology Graduate University · JPScripps Research Institute · US

Funding

NADH-UBIQUINONE REDUCTASE OF PARACOCCUS DENITRIFICANSR01GM033712 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI YAGI, TAKAO · 1985 to 2011
$6.4M
NIGMS NIH HHS R01 GM033712NIGMS NIH HHS R01GM033712
6 · The paper itself

Abstract

The primary mobile electron-carrier in the aerobic respiratory chain of Salmonella is ubiquinone. Demethylmenaquinone and menaquinone are alternative electron-carriers involved in anaerobic respiration. Ubiquinone biosynthesis was disrupted in strains bearing deletions of the ubiA or ubiE genes. In soft tryptone agar both mutant strains swam poorly. However, the ubiA deletion mutant strain produced suppressor mutant strains with somewhat rescued motility and growth. Six independent suppressor mutants were purified and comparative genome sequence analysis revealed that they each bore a single new missense mutation, which localized to genes for subunits of NADH : quinone oxidoreductase-1. Four mutants bore an identical nuoG(Q297K) mutation, one mutant bore a nuoM(A254S) mutation and one mutant bore a nuoN(A444E) mutation. The NuoG subunit is part of the hydrophilic domain of NADH : quinone oxidoreductase-1 and the NuoM and NuoN subunits are part of the hydrophobic membrane-embedded domain. Respiration was rescued and the suppressed mutant strains grew better in Luria-Bertani broth medium and could use l-malate as a sole carbon source. The quinone pool of the cytoplasmic membrane was characterized by reversed-phase HPLC. Wild-type cells made ubiquinone and menaquinone. Strains with a ubiA deletion mutation made demethylmenaquinone and menaquinone and the ubiE deletion mutant strain made demethylmenaquinone and 2-octaprenyl-6-methoxy-1,4-benzoquinone; the total quinone pool was reduced. Immunoblotting found increased NADH : quinone oxidoreductase-1 levels for ubiquinone-biosynthesis mutant strains and enzyme assays measured electron transfer from NADH to demethylmenaquinone or menaquinone. Under certain growth conditions the suppressor mutations improved electron flow activity of NADH : quinone oxidoreductase-1 for cells bearing a ubiA deletion mutation.

Indexed as

LocomotionSuppression, GeneticCell MembraneChromatography, High Pressure LiquidDNA Mutational AnalysisGenome, BacterialMetabolic Networks and PathwaysMutation, MissenseQuinone ReductasesSalmonellaSequence Analysis, DNAUbiquinoneNADH dehydrogenase (quinone)Quinone ReductasesUbiquinone

Identifiers

PMID24692644
PMCPMC4039242
OpenAlexW1985332363

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.