Evidence map›Paper›PMID 24691551›Full record

ArticleHuman molecular genetics2014

Regulation of a novel isoform of Receptor Expression Enhancing Protein REEP6 in rod photoreceptors by bZIP transcription factor NRL.

Hong Hao, Shobi Veleri, Bo Sun, Douglas S Kim, Patrick W Keeley, Jung-Woong Kim, Hyun-Jin Yang, Sharda P Yadav, Souparnika H Manjunath, Raman Sood and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Human molecular genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
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  7. Review
  8. Article
  9. Article
  10. Novel REEP6 gene mutation associated with autosomal recessive retinitis pigmentosa.Documenta ophthalmologica. Advances in ophthalmology · 2020
    Article
  11. Review
  12. Generation, transcriptome profiling, and functional validation of cone-rich human retinal organoids.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  13. Article
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  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 3 countries.

Hong HaoNeurobiology Neurodegeneration and Repair Laboratory, National Eye Institute, National Institutes of Health, Bethesda, MD, USA.
Shobi VeleriNeurobiology Neurodegeneration and Repair Laboratory, National Eye Institute, National Institutes of Health, Bethesda, MD, USA.
Bo SunNeurobiology Neurodegeneration and Repair Laboratory, National Eye Institute, National Institutes of Health, Bethesda, MD, USA.
Douglas S KimNeurobiology Neurodegeneration and Repair Laboratory, National Eye Institute, National Institutes of Health, Bethesda, MD, USA Howard Hughes Medical Institute, Janelia Farm Research Campus, Ashburn, VA, USA.
Patrick W KeeleyNeuroscience Research Institute Department of Molecular, Cellular and Developmental Biology and.
Jung-Woong KimNeurobiology Neurodegeneration and Repair Laboratory, National Eye Institute, National Institutes of Health, Bethesda, MD, USA.
Hyun-Jin YangNeurobiology Neurodegeneration and Repair Laboratory, National Eye Institute, National Institutes of Health, Bethesda, MD, USA.
Sharda P YadavNeurobiology Neurodegeneration and Repair Laboratory, National Eye Institute, National Institutes of Health, Bethesda, MD, USA.
Souparnika H ManjunathNeurobiology Neurodegeneration and Repair Laboratory, National Eye Institute, National Institutes of Health, Bethesda, MD, USA.
Raman SoodOncogenesis and Development Section and Zebrafish Core, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA.
Paul LiuOncogenesis and Development Section and Zebrafish Core, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA.
Benjamin E ReeseNeuroscience Research Institute Department of Psychological and Brain Sciences, University of California at Santa Barbara, CA, USA.
Anand SwaroopNeurobiology Neurodegeneration and Repair Laboratory, National Eye Institute, National Institutes of Health, Bethesda, MD, USA swaroopa@nei.nih.gov.
National Institutes of Health · USNational Eye Institute · USNeuroscience Institute · ITHoward Hughes Medical Institute · USNational Human Genome Research Institute · US

Funding

Regulation of retinal developmentZIAEY000450 · NEI · NATIONAL EYE INSTITUTE · PI SWAROOP, ANAND · 2009 to 2025
$71.0M
GENETIC ANALYSIS OF ZEBRAFISH EMBRYO DEVELOPMENTZIAHG000102 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI LIU, PAUL · 2009 to 2025
$17.1M
Development of Retinal Bipolar CellsR01EY019968 · NEI · UNIVERSITY OF CALIFORNIA SANTA BARBARA · PI REESE, BENJAMIN E · 2010 to 2023
$4.9M
NHGRI/DIR Zebrafish CoreZIGHG200351 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI SOOD, RAMAN · 2010 to 2014
$3.9M
Howard Hughes Medical InstituteNEI NIH HHS EY019968NEI NIH HHS R01 EY019968
6 · The paper itself

Abstract

The Maf-family leucine zipper transcription factor NRL is essential for rod photoreceptor development and functional maintenance in the mammalian retina. Mutations in NRL are associated with human retinopathies, and loss of Nrl in mice leads to a cone-only retina with the complete absence of rods. Among the highly down-regulated genes in the Nrl(-/-) retina, we identified receptor expression enhancing protein 6 (Reep6), which encodes a member of a family of proteins involved in shaping of membrane tubules and transport of G-protein coupled receptors. Here, we demonstrate the expression of a novel Reep6 isoform (termed Reep6.1) in the retina by exon-specific Taqman assay and rapid analysis of complementary deoxyribonucleic acid (cDNA) ends (5'-RACE). The REEP6.1 protein includes 27 additional amino acids encoded by exon 5 and is specifically expressed in rod photoreceptors of developing and mature retina. Chromatin immunoprecipitation assay identified NRL binding within the Reep6 intron 1. Reporter assays in cultured cells and transfections in retinal explants mapped an intronic enhancer sequence that mediated NRL-directed Reep6.1 expression. We also demonstrate that knockdown of Reep6 in mouse and zebrafish resulted in death of retinal cells. Our studies implicate REEP6.1 as a key functional target of NRL-centered transcriptional regulatory network in rod photoreceptors.

Indexed as

Transcriptional ActivationAnimalsBasic-Leucine Zipper Transcription FactorsEnhancer Elements, GeneticEye ProteinsGene Regulatory NetworksHEK293 CellsHumansIntronsMembrane ProteinsMembrane Transport ProteinsMice, Inbred C57BLOrgan SpecificityProtein IsoformsRetinal Rod Photoreceptor CellsZebrafishBasic-Leucine Zipper Transcription FactorsEye ProteinsMembrane ProteinsMembrane Transport ProteinsNrl protein, mouseProtein IsoformsREEP6 protein, mouse

Identifiers

PMID24691551
PMCPMC4103675
OpenAlexW2161237773

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.