Evidence map›Paper›PMID 24691488›Full record

ArticlePloS one2014

Precise gene modification mediated by TALEN and single-stranded oligodeoxynucleotides in human cells.

Xiaoling Wang, Yingjia Wang, He Huang, Buyuan Chen, Xinji Chen, Jianda Hu, Tammy Chang, Ren-Jang Lin, Jiing-Kuan Yee

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. Reporter Alleles in hiPSCs: Visual Cues on Development and Disease.International journal of molecular sciences · 2024
    Review
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  8. Using CRISPR-Cas9 to Generate Gene-Corrected Autologous iPSCs for the Treatment of Inherited Retinal Degeneration.Molecular therapy : the journal of the American Society of Gene Therapy · 2017
    Article
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  10. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Xiaoling WangDepartment of Virology, Beckman Research Institute of City of Hope, Duarte, California, United States of America.
Yingjia WangDepartment of Virology, Beckman Research Institute of City of Hope, Duarte, California, United States of America; Bone Marrow Transplantation Center, The First Affiliated Hospital, Zhejiang University, Hangzhou, Zhejiang, China.
He HuangBone Marrow Transplantation Center, The First Affiliated Hospital, Zhejiang University, Hangzhou, Zhejiang, China.
Buyuan ChenDepartment of Molecular and Cellular Biology, Beckman Research Institute of City of Hope, Duarte, California, United States of America; Department of Hematology, Union Hospital of Fujian Medical University, Fuzhou, Fujian, China.
Xinji ChenDepartment of Molecular and Cellular Biology, Beckman Research Institute of City of Hope, Duarte, California, United States of America; Department of Hematology, Union Hospital of Fujian Medical University, Fuzhou, Fujian, China.
Jianda HuDepartment of Hematology, Union Hospital of Fujian Medical University, Fuzhou, Fujian, China.
Tammy ChangDepartment of Virology, Beckman Research Institute of City of Hope, Duarte, California, United States of America.
Ren-Jang LinDepartment of Molecular and Cellular Biology, Beckman Research Institute of City of Hope, Duarte, California, United States of America.
Jiing-Kuan YeeDepartment of Virology, Beckman Research Institute of City of Hope, Duarte, California, United States of America.
Beckman Research InstituteCity of Hope · USFirst Affiliated Hospital Zhejiang University · CNUnion Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The development of human embryonic stem cells (ESCs) and induced pluripotent stem cells (iPSCs) facilitates in vitro studies of human disease mechanisms, speeds up the process of drug screening, and raises the feasibility of using cell replacement therapy in clinics. However, the study of genotype-phenotype relationships in ESCs or iPSCs is hampered by the low efficiency of site-specific gene editing. Transcription activator-like effector nucleases (TALENs) spurred interest due to the ease of assembly, high efficiency and faithful gene targeting. In this study, we optimized the TALEN design to maximize its genomic cutting efficiency. We showed that using optimized TALENs in conjunction with single-strand oligodeoxynucleotide (ssODN) allowed efficient gene editing in human cells. Gene mutations and gene deletions for up to 7.8 kb can be accomplished at high efficiencies. We established human tumor cell lines and H9 ESC lines with homozygous deletion of the microRNA-21 (miR-21) gene and miR-9-2 gene. These cell lines provide a robust platform to dissect the roles these genes play during cell differentiation and tumorigenesis. We also observed that the endogenous homologous chromosome can serve as a donor template for gene editing. Overall, our studies demonstrate the versatility of using ssODN and TALEN to establish genetically modified cells for research and therapeutic application.

Indexed as

Genetic Association StudiesCarcinogenesisCell DifferentiationClustered Regularly Interspaced Short Palindromic RepeatsDNA End-Joining RepairEmbryonic Stem CellsGene DeletionHumansInduced Pluripotent Stem CellsMicroRNAsOligodeoxyribonucleotidesMicroRNAsMIRN21 microRNA, humanMIRN92 microRNA, humanOligodeoxyribonucleotides

Identifiers

PMID24691488
PMCPMC3972112
OpenAlexW2022901690

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.