Evidence map›Paper›PMID 24690951›Full record

ArticlePloS one2014

Gene splicing of an invertebrate beta subunit (LCavβ) in the N-terminal and HOOK domains and its regulation of LCav1 and LCav2 calcium channels.

Taylor F Dawson, Adrienne N Boone, Adriano Senatore, Joshua Piticaru, Shano Thiyagalingam, Daniel Jackson, Angus Davison, J David Spafford

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.9field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Calmodulin regulates CaThe Journal of biological chemistry · 2017
    Article
  5. Evolutionary insights into T-type CaThe Journal of general physiology · 2017
    Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Taylor F DawsonDepartment of Biology, University of Waterloo, Waterloo, Ontario, Canada.
Adrienne N BooneDepartment of Biology, University of Waterloo, Waterloo, Ontario, Canada.
Adriano SenatoreDepartment of Biology, University of Waterloo, Waterloo, Ontario, Canada.
Joshua PiticaruDepartment of Biology, University of Waterloo, Waterloo, Ontario, Canada.
Shano ThiyagalingamDepartment of Biology, University of Waterloo, Waterloo, Ontario, Canada.
Daniel JacksonInstitute of Genetics, School of Biology, University of Nottingham, Nottingham, United Kingdom.
Angus DavisonInstitute of Genetics, School of Biology, University of Nottingham, Nottingham, United Kingdom.
J David SpaffordDepartment of Biology, University of Waterloo, Waterloo, Ontario, Canada.
University of Waterloo · CAUniversity of Nottingham · GB

Funding

Biotechnology and Biological Sciences Research Council BB/F018940/1
6 · The paper itself

Abstract

The accessory beta subunit (Ca(v)β) of calcium channels first appear in the same genome as Ca(v)1 L-type calcium channels in single-celled coanoflagellates. The complexity of this relationship expanded in vertebrates to include four different possible Ca(v)β subunits (β1, β2, β3, β4) which associate with four Ca(v)1 channel isoforms (Ca(v)1.1 to Ca(v)1.4) and three Ca(v)2 channel isoforms (Ca(v)2.1 to Ca(v)2.3). Here we assess the fundamentally-shared features of the Ca(v)β subunit in an invertebrate model (pond snail Lymnaea stagnalis) that bears only three homologous genes: (LCa(v)1, LCa(v)2, and LCa(v)β). Invertebrate Ca(v)β subunits (in flatworms, snails, squid and honeybees) slow the inactivation kinetics of Ca(v)2 channels, and they do so with variable N-termini and lacking the canonical palmitoylation residues of the vertebrate β2a subunit. Alternative splicing of exon 7 of the HOOK domain is a primary determinant of a slow inactivation kinetics imparted by the invertebrate LCa(v)β subunit. LCa(v)β will also slow the inactivation kinetics of LCa(v)3 T-type channels, but this is likely not physiologically relevant in vivo. Variable N-termini have little influence on the voltage-dependent inactivation kinetics of differing invertebrate Ca(v)β subunits, but the expression pattern of N-terminal splice isoforms appears to be highly tissue specific. Molluscan LCa(v)β subunits have an N-terminal "A" isoform (coded by exons: 1a and 1b) that structurally resembles the muscle specific variant of vertebrate β1a subunit, and has a broad mRNA expression profile in brain, heart, muscle and glands. A more variable "B" N-terminus (exon 2) in the exon position of mammalian β3 and has a more brain-centric mRNA expression pattern. Lastly, we suggest that the facilitation of closed-state inactivation (e.g. observed in Ca(v)2.2 and Ca(v)β3 subunit combinations) is a specialization in vertebrates, because neither snail subunit (LCa(v)2 nor LCa(v)β) appears to be compatible with this observed property.

Indexed as

Alternative SplicingAmino Acid SequenceAnimalsCalcium Channels, L-TypeConserved SequenceExonsGene Expression ProfilingHumansIntronsIon Channel GatingKineticsLymnaeaMolecular Sequence DataProtein IsoformsProtein Structure, TertiaryProtein SubunitsCalcium Channels, L-TypeProtein IsoformsProtein SubunitsRNA, Messenger

Identifiers

PMID24690951
PMCPMC3972191
OpenAlexW2013623022

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.