Evidence map›Paper›PMID 24690753›Full record

ArticleHeredity2014

Divergent selection for opsin gene variation in guppy (Poecilia reticulata) populations of Trinidad and Tobago.

A Tezuka, S Kasagi, C van Oosterhout, M McMullan, W M Iwasaki, D Kasai, M Yamamichi, H Innan, S Kawamura, M Kawata

Open access · bronzeAbstract read
In one paragraph

Article in Heredity, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
8.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Molecular advances to study the function, evolution and spectral tuning of arthropod visual opsins.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2022
    Review
  3. Article
  4. Genetic and plastic variation in opsin gene expression, light sensitivity, and female response to visual signals in the guppy.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  5. Article
  6. Article
  7. Article
  8. Exploring visual plasticity: dietary carotenoids can change color vision in guppies (Poecilia reticulata).Journal of comparative physiology. A, Neuroethology, sensory, neural, and behavioral physiology · 2016
    Article
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

A TezukaDepartment of Ecology and Evolutionary Biology, Graduate School of Science, Tohoku University, Sendai, Japan.
S KasagiDepartment of Integrated Biosciences, Graduate School of Frontier Sciences, University of Tokyo, Kashiwa, Japan.
C van OosterhoutSchool of Environmental Sciences, University of East Anglia, Norwich Research Park, Norwich, UK.
M McMullanSchool of Environmental Sciences, University of East Anglia, Norwich Research Park, Norwich, UK.
W M IwasakiDepartment of Ecology and Evolutionary Biology, Graduate School of Science, Tohoku University, Sendai, Japan.ORCID 0000000247187605
D KasaiDepartment of Integrated Biosciences, Graduate School of Frontier Sciences, University of Tokyo, Kashiwa, Japan.
M YamamichiDepartment of Evolutionary Studies of Biosystems, Graduate University for Advanced Studies (Sokendai), Hayama, Japan.
H InnanDepartment of Evolutionary Studies of Biosystems, Graduate University for Advanced Studies (Sokendai), Hayama, Japan.
S KawamuraDepartment of Integrated Biosciences, Graduate School of Frontier Sciences, University of Tokyo, Kashiwa, Japan.
M KawataDepartment of Ecology and Evolutionary Biology, Graduate School of Science, Tohoku University, Sendai, Japan.ORCID 0000000187165438
The University of Tokyo · JPTohoku University · JPThe Graduate University for Advanced Studies, SOKENDAI · JPUniversity of East Anglia · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The guppy is known to exhibit remarkable interindividual variations in spectral sensitivity of middle to long wavelength-sensitive (M/LWS) cone photoreceptor cells. The guppy has four M/LWS-type opsin genes (LWS-1, LWS-2, LWS-3 and LWS-4) that are considered to be responsible for this sensory variation. However, the allelic variation of the opsin genes, particularly in terms of their absorption spectrum, has not been explored in wild populations. Thus, we examined nucleotide variations in the four M/LWS opsin genes as well as blue-sensitive SWS2-B and ultraviolet-sensitive SWS1 opsin genes for comparison and seven non-opsin nuclear loci as reference genes in 10 guppy populations from various light environments in Trinidad and Tobago. For the first time, we discovered a potential spectral variation (180 Ser/Ala) in LWS-1 that differed at an amino acid site known to affect the absorption spectra of opsins. Based on a coalescent simulation of the nucleotide variation of the reference genes, we showed that the interpopulation genetic differentiation of two opsin genes was significantly larger than the neutral expectation. Furthermore, this genetic differentiation was significantly related to differences in dissolved oxygen (DO) level, and it was not explained by the spatial distance between populations. The DO levels are correlated with eutrophication that possibly affects the color of aquatic environments. These results suggest that the population diversity of opsin genes is significantly driven by natural selection and that the guppy could adapt to various light environments through color vision changes.

Indexed as

Genetic VariationSelection, GeneticAnimalsEnvironmentFemaleFish ProteinsGene FrequencyGenetics, PopulationLightLinkage DisequilibriumMaleOpsinsPoeciliaSequence Analysis, DNATrinidad and TobagoFish ProteinsOpsins

Identifiers

PMID24690753
PMCPMC4220713
OpenAlexW2130383344

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.