Evidence map›Paper›PMID 24689074›Full record

ArticleMolecular genetics & genomic medicine2014

Copy number analysis of NIPBL in a cohort of 510 patients reveals rare copy number variants and a mosaic deletion.

Yu-Wei Cheng, Christopher A Tan, Agata Minor, Kelly Arndt, Latrice Wysinger, Dorothy K Grange, Beth A Kozel, Nathaniel H Robin, Darrel Waggoner, Carrie Fitzpatrick and 2 more

Open access · goldAbstract read
In one paragraph

Article in Molecular genetics & genomic medicine, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.6field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 11 citations in OpenAlex.

  1. Trial
  2. Article
  3. Article
  4. Insights into genetics, human biology and disease gleaned from family based genomic studies.Genetics in medicine : official journal of the American College of Medical Genetics · 2019
    Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Yu-Wei ChengDepartment of Human Genetics, University of Chicago Chicago, Illinois.
Christopher A TanDepartment of Human Genetics, University of Chicago Chicago, Illinois.
Agata MinorDepartment of Pathology, University of Chicago Chicago, Illinois.
Kelly ArndtDepartment of Human Genetics, University of Chicago Chicago, Illinois.
Latrice WysingerDepartment of Human Genetics, University of Chicago Chicago, Illinois.
Dorothy K GrangeDepartment of Pediatrics, Division of Genetics and Genomic Medicine, Washington University School of Medicine St. Louis, Missouri.
Beth A KozelDepartment of Pediatrics, Division of Genetics and Genomic Medicine, Washington University School of Medicine St. Louis, Missouri.
Nathaniel H RobinDepartment of Genetics, University of Alabama at Birmingham Birmingham, Alabama.
Darrel WaggonerDepartment of Human Genetics, University of Chicago Chicago, Illinois.
Carrie FitzpatrickDepartment of Pathology, University of Chicago Chicago, Illinois.
Soma DasDepartment of Human Genetics, University of Chicago Chicago, Illinois.
Daniela Del GaudioDepartment of Human Genetics, University of Chicago Chicago, Illinois.
University of Chicago · USWashington University in St. Louis · USUniversity of Alabama at Birmingham · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cornelia de Lange syndrome (CdLS) is a genetically heterogeneous disorder characterized by growth retardation, intellectual disability, upper limb abnormalities, hirsutism, and characteristic facial features. In this study we explored the occurrence of intragenic NIPBL copy number variations (CNVs) in a cohort of 510 NIPBL sequence-negative patients with suspected CdLS. Copy number analysis was performed by custom exon-targeted oligonucleotide array-comparative genomic hybridization and/or MLPA. Whole-genome SNP array was used to further characterize rearrangements extending beyond the NIPBL gene. We identified NIPBL CNVs in 13 patients (2.5%) including one intragenic duplication and a deletion in mosaic state. Breakpoint sequences in two patients provided further evidence of a microhomology-mediated replicative mechanism as a potential predominant contributor to CNVs in NIPBL. Patients for whom clinical information was available share classical CdLS features including craniofacial and limb defects. Our experience in studying the frequency of NIBPL CNVs in the largest series of patients to date widens the mutational spectrum of NIPBL and emphasizes the clinical utility of performing NIPBL deletion/duplication analysis in patients with CdLS.

Indexed as

Array-CGHcopy number variationCornelia de LangeMLPANIPBL

Identifiers

PMID24689074
PMCPMC3960053
OpenAlexW2016720291

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.