ReviewComputational and structural biotechnology journal2013
Reconstruction of SAXS Profiles from Protein Structures.
Review in Computational and structural biotechnology journal, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.
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Who cites it
16 citing papers in PubMed.
- SuAVE-Scatter: A Module for Integrating Simulations and SAXS/SANS Analyses.Journal of chemical information and modeling · 2026Article
- Twists and Turns of Liquid Crystals Unravelled by Small-Angle Scattering.Small methods · 2026Review
- Structural basis for IL-33 recognition and its antagonism by the helminth effector protein HpARI2.Nature communications · 2024Article
- A Review of Natural Polysaccharides: Sources, Characteristics, Properties, Food, and Pharmaceutical Applications.International journal of molecular sciences · 2024Review
- Evaluation of optimal monoenergetic images acquired by dual-energy CT in the diagnosis of T staging of thoracic esophageal cancer.Insights into imaging · 2023Article
- The solution structure of the unbound IgG Fc receptor CD64 resembles its crystal structure: Implications for function.PloS one · 2023Article
- Combining Experimental Data and Computational Methods for the Non-Computer Specialist.Molecules (Basel, Switzerland) · 2020Review
- Integrating solvation shell structure in experimentally driven molecular dynamics using x-ray solution scattering data.The Journal of chemical physics · 2020Article
- Using Spectral Representation to Classify Proteins' Conformational States.International journal of molecular sciences · 2018Article
- Evaluating Anti-CD32b F(ab) Conformation Using Molecular Dynamics and Small-Angle X-Ray Scattering.Biophysical journal · 2018Article
- Molecular simulations of self-assembling bio-inspired supramolecular systems and their connection to experiments.Chemical Society reviews · 2018Review
- Eye patches: Protein assembly of index-gradient squid lenses.Science (New York, N.Y.) · 2017Article
- A new definition and properties of the similarity value between two protein structures.Journal of biological physics · 2016Article
- BCL::SAXS: GPU accelerated Debye method for computation of small angle X-ray scattering profiles.Proteins · 2015Article
- WAXSiS: a web server for the calculation of SAXS/WAXS curves based on explicit-solvent molecular dynamics.Nucleic acids research · 2015Article
- Investigating increasingly complex macromolecular systems with small-angle X-ray scattering.IUCrJ · 2014Review
Corrections and comments
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Authors and funding
3 authors.
Funding
Abstract
Small angle X-ray scattering (SAXS) is used for low resolution structural characterization of proteins often in combination with other experimental techniques. After briefly reviewing the theory of SAXS we discuss computational methods based on 1) the Debye equation and 2) Spherical Harmonics to compute intensity profiles from a particular macromolecular structure. Further, we review how these formulas are parameterized for solvent density and hydration shell adjustment. Finally we introduce our solution to compute SAXS profiles utilizing GPU acceleration.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.