Evidence map›Paper›PMID 24688679›Full record

ReviewComputational and structural biotechnology journal2012

Escherichia coli redox mutants as microbial cell factories for the synthesis of reduced biochemicals.

Jimena A Ruiz, Alejandra de Almeida, Manuel S Godoy, Mariela P Mezzina, Gonzalo N Bidart, Beatriz S Méndez, M Julia Pettinari, Pablo I Nikel

Abstract readReview
In one paragraph

Review in Computational and structural biotechnology journal, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. The ArcAB Two-Component System: Function in Metabolism, Redox Control, and Infection.Microbiology and molecular biology reviews : MMBR · 2022
    Review
  3. Article
  4. Microbial Cell Factories àApplied and environmental microbiology · 2018
    Article
  5. Article
  6. Article
  7. Article
  8. Engineering microaerobic metabolism of E. coli for 1,2-propanediol production.Journal of industrial microbiology & biotechnology · 2015
    Article
  9. Article
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Jimena A RuizDepartamento de Química Biológica (IQUIBICEN-CONICET), Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Buenos Aires, Argentina ; Instituto de Biociencias Agrícolas y Ambientales (INBA-CONICET), Facultad de Agronomía, Universidad de Buenos Aires, Buenos Aires, Argentina.
Alejandra de AlmeidaDepartamento de Química Biológica (IQUIBICEN-CONICET), Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Buenos Aires, Argentina.
Manuel S GodoyDepartamento de Química Biológica (IQUIBICEN-CONICET), Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Buenos Aires, Argentina.
Mariela P MezzinaDepartamento de Química Biológica (IQUIBICEN-CONICET), Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Buenos Aires, Argentina.
Gonzalo N BidartInstituto de Investigaciones Biotecnológicas "Dr. Rodolfo A. Ugalde" (IIB-CONICET), Universidad Nacional de San Martín, San Martín, Buenos Aires, Argentina.
Beatriz S MéndezDepartamento de Química Biológica (IQUIBICEN-CONICET), Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Buenos Aires, Argentina.
M Julia PettinariDepartamento de Química Biológica (IQUIBICEN-CONICET), Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Buenos Aires, Argentina.
Pablo I NikelDepartamento de Química Biológica (IQUIBICEN-CONICET), Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Buenos Aires, Argentina ; Instituto de Investigaciones Biotecnológicas "Dr. Rodolfo A. Ugalde" (IIB-CONICET), Universidad Nacional de San Martín, San Martín, Buenos Aires, Argentina.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bioprocesses conducted under conditions with restricted O2 supply are increasingly exploited for the synthesis of reduced biochemicals using different biocatalysts. The model facultative aerobe Escherichia coli, the microbial cell factory par excellence, has elaborate sensing and signal transduction mechanisms that respond to the availability of electron acceptors and alternative carbon sources in the surrounding environment. In particular, the ArcBA and CreBC two-component signal transduction systems are largely responsible for the metabolic regulation of redox control in response to O2 availability and carbon source utilization, respectively. Significant advances in the understanding of the biochemical, genetic, and physiological duties of these regulatory systems have been achieved in recent years. This situation allowed to rationally-design novel engineering approaches that ensure optimal carbon and energy flows within central metabolism, as well as to manipulate redox homeostasis, in order to optimize the production of industrially-relevant metabolites. In particular, metabolic flux analysis provided new clues to understand the metabolic regulation mediated by the ArcBA and CreBC systems. Genetic manipulation of these regulators proved useful for designing microbial cells factories tailored for the synthesis of reduced biochemicals with added value, such as poly(3-hydroxybutyrate), under conditions with restricted O2 supply. This network-wide strategy is in contrast with traditional metabolic engineering approaches, that entail direct modification of the pathway(s) at stake, and opens new avenues for the targeted modulation of central catabolic pathways at the transcriptional level.

Indexed as

ArcBACreBCEscherichia colimetabolic flux analysispolyhydroxyalkanoatesredox homeostasisreduced biochemicals

Identifiers

PMID24688679
PMCPMC3962086

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.