Evidence map›Paper›PMID 24688484›Full record

ReviewFrontiers in microbiology2014

The arable ecosystem as battleground for emergence of new human pathogens.

Leonard S van Overbeek, Joop van Doorn, Jan H Wichers, Aart van Amerongen, Herman J W van Roermund, Peter T J Willemsen

Open access · goldAbstract readReview
In one paragraph

Review in Frontiers in microbiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
7.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 79 citations in OpenAlex.

  1. Review
  2. Intraspecies competition amongFrontiers in plant science · 2024
    Article
  3. Review
  4. EnterohemorrhagicInternational journal of molecular sciences · 2022
    Review
  5. Article
  6. Transmission ofMicroorganisms · 2021
    Article
  7. Article
  8. Article
  9. Article
  10. The Role of Pea (Microorganisms · 2020
    Article
  11. Review
  12. Circulation of Shiga Toxin-ProducingFrontiers in microbiology · 2020
    Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Leonard S van OverbeekPlant Research International, Wageningen University and Research Centre Wageningen, Netherlands.
Joop van DoornApplied Plant Research, Wageningen University and Research Centre Lisse, Netherlands.
Jan H WichersFood and Biobased Research, Wageningen University and Research Centre Wageningen, Netherlands.
Aart van AmerongenFood and Biobased Research, Wageningen University and Research Centre Wageningen, Netherlands.
Herman J W van RoermundCentral Veterinary Institute, Wageningen University and Research Centre Lelystad, Netherlands.
Peter T J WillemsenCentral Veterinary Institute, Wageningen University and Research Centre Lelystad, Netherlands.
GGz centraal · NLWageningen University & Research · NLGraduate School Experimental Plant Sciences · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Disease incidences related to Escherichia coli and Salmonella enterica infections by consumption of (fresh) vegetables, sprouts, and occasionally fruits made clear that these pathogens are not only transmitted to humans via the "classical" routes of meat, eggs, and dairy products, but also can be transmitted to humans via plants or products derived from plants. Nowadays, it is of major concern that these human pathogens, especially the ones belonging to the taxonomical family of Enterobacteriaceae, become adapted to environmental habitats without losing their virulence to humans. Adaptation to the plant environment would lead to longer persistence in plants, increasing their chances on transmission to humans via consumption of plant-derived food. One of the mechanisms of adaptation to the plant environment in human pathogens, proposed in this paper, is horizontal transfer of genes from different microbial communities present in the arable ecosystem, like the ones originating from soil, animal digestive track systems (manure), water and plants themselves. Genes that would confer better adaptation to the phytosphere might be genes involved in plant colonization, stress resistance and nutrient acquisition and utilization. Because human pathogenic enterics often were prone to genetic exchanges via phages and conjugative plasmids, it was postulated that these genetic elements may be hold key responsible for horizontal gene transfers between human pathogens and indigenous microbes in agroproduction systems. In analogy to zoonosis, we coin the term phytonosis for a human pathogen that is transmitted via plants and not exclusively via animals.

Indexed as

EHECemerging pathogensEnterobacteriaceaegene transferphytonosesrhizosphere

Identifiers

PMID24688484
PMCPMC3960585
OpenAlexW2123864908

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.