Evidence map›Paper›PMID 24688299›Full record

ArticleGenetics and molecular biology2014

Use of the heteroduplex mobility assay and cell sorting to select genome sequences of the CCR5 gene in HEK 293T cells edited by transcription activator-like effector nucleases.

Arildo Nerys-Junior, Lendel C Costa, Luciene P Braga-Dias, Márcia Oliveira, Atila D Rossi, Rodrigo Delvecchio da Cunha, Gabriel S Gonçalves, Amilcar Tanuri

Open access · goldAbstract read
In one paragraph

Article in Genetics and molecular biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.6field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Review
  5. Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Arildo Nerys-JuniorLaboratório de Virologia Molecular, Universidade Federal do Rio de Janeiro, Rio de Janeiro, RJ, Brazil .
Lendel C CostaLaboratório de Virologia Molecular, Universidade Federal do Rio de Janeiro, Rio de Janeiro, RJ, Brazil .
Luciene P Braga-DiasPlataforma de Animais Transgênicos, Fundação Oswaldo Cruz, Rio de Janeiro, RJ, Brazil .
Márcia OliveiraLaboratório de Pesquisas Sobre o Timo, Fundação Oswaldo Cruz, Rio de Janeiro, RJ, Brazil .
Atila D RossiLaboratório de Virologia Molecular, Universidade Federal do Rio de Janeiro, Rio de Janeiro, RJ, Brazil .
Rodrigo Delvecchio da CunhaLaboratório de Virologia Molecular, Universidade Federal do Rio de Janeiro, Rio de Janeiro, RJ, Brazil .
Gabriel S GonçalvesLaboratório de Virologia Molecular, Universidade Federal do Rio de Janeiro, Rio de Janeiro, RJ, Brazil .
Amilcar TanuriLaboratório de Virologia Molecular, Universidade Federal do Rio de Janeiro, Rio de Janeiro, RJ, Brazil .
Universidade Federal do Rio de Janeiro · BRFundação Oswaldo Cruz · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Engineered nucleases such as zinc finger nucleases (ZFN) and transcription activator-like effector nucleases (TALEN) are one of the most promising tools for modifying genomes. These site-specific enzymes cause double-strand breaks that allow gene disruption or gene insertion, thereby facilitating genetic manipulation. The major problem associated with this approach is the labor-intensive procedures required to screen and confirm the cellular modification by nucleases. In this work, we produced a TALEN that targets the human CCR5 gene and developed a heteroduplex mobility assay for HEK 293T cells to select positive colonies for sequencing. This approach provides a useful tool for the quick detection and easy assessment of nuclease activity.

Indexed as

CCR5gene knockoutgenome editingHMATALEN

Identifiers

PMID24688299
PMCPMC3958318
OpenAlexW1993565576

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.