Evidence map›Paper›PMID 24687849›Full record

ArticleMolecular and cellular biology2014

KAP1 represses differentiation-inducible genes in embryonic stem cells through cooperative binding with PRC1 and derepresses pluripotency-associated genes.

Bo Cheng, Xiaojun Ren, Tom K Kerppola

Open access · bronzeAbstract read
In one paragraph

Article in Molecular and cellular biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 46 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Bo ChengDepartment of Biological Chemistry, University of Michigan Medical School, Ann Arbor, Michigan, USA.
Xiaojun Ren
Tom K Kerppola
University of Michigan–Ann Arbor · US

Funding

Regional Pilot And Feasibility Study Grants ProgramP30DK020572 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Mehboob A Hussain · 2013 to 2026
$24.3M
Optimization of Bimolecular Fluorescence Complementation Probes for New Imaging FR01GM086213 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI KERPPOLA, TOM KLAUS, REDDY, KAREN LYNN · 2008 to 2011
$2.8M
Visualization of Combinatorial Epigenetic Marks and Complexes in Animals Using FlR01DA030339 · NIDA · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI KERPPOLA, TOM KLAUS · 2010 to 2016
$1.7M
NIDA NIH HHS DA030339NIDA NIH HHS R01 DA030339NIDDK NIH HHS P30 DK020572NIGMS NIH HHS GM086213NIGMS NIH HHS R01 GM086213
6 · The paper itself

Abstract

Embryonic stem (ES) cells express pluripotency-associated genes and repress differentiation-inducible genes. The activities of these genes are coordinately reversed during differentiation. The changes in the transcriptome upon conditional KAP1 knockout in ES cells overlapped with the changes during embryoid body formation. KAP1 repressed differentiation-inducible genes and derepressed pluripotency-associated genes in ES cells. KAP1 formed complexes with polycomb repressive complexes 1 (PRC1) through an interaction that was mediated by the KAP1 coiled-coil region. KAP1 and PRC1 bound cooperatively at the promoters of differentiation-inducible genes and repressed their transcription. In contrast, KAP1 bound the transcribed and flanking sequences of pluripotency-associated genes, did not enhance PRC1 binding, and derepressed their transcription. KAP1 had opposite effects on differentiation-inducible and pluripotency-associated gene transcription both in ES cells and in differentiating embryoid bodies. The region of KAP1 that mediated the interaction with PRC1 was required for KAP1 enhancement of PRC1 binding and for KAP1 repression of transcription at differentiation-inducible promoters. This region of KAP1 was not required for KAP1 suppression of PRC1 binding or for KAP1 derepression of transcription at pluripotency-associated promoters. The opposite effects of KAP1 on the transcription of differentiation-inducible versus pluripotency-associated genes contributed to the reciprocal changes in their transcription during differentiation.

Indexed as

Gene Expression RegulationAnimalsCell DifferentiationCell LineChromosome MappingEmbryonic Stem CellsMiceNuclear ProteinsPluripotent Stem CellsPolycomb Repressive Complex 1Promoter Regions, GeneticProtein BindingProtein Structure, TertiaryRepressor ProteinsRNA InterferenceRNA, Small InterferingNuclear ProteinsPolycomb Repressive Complex 1Repressor ProteinsRNA, Small InterferingRnf2 protein, mouseTrim28 protein, mouseTripartite Motif-Containing Protein 28Ubiquitin-Protein Ligases

Identifiers

PMID24687849
PMCPMC4019052
OpenAlexW2139149201

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.