Evidence map›Paper›PMID 24685714›Full record

ArticleAnnals of botany2014

Arabinogalactan protein 31 (AGP31), a putative network-forming protein in Arabidopsis thaliana cell walls?

May Hijazi, David Roujol, Huan Nguyen-Kim, Liliana Del Rocio Cisneros Castillo, Estelle Saland, Elisabeth Jamet, Cécile Albenne

Open access · bronzeAbstract read
In one paragraph

Article in Annals of botany, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
8.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 60 citations in OpenAlex.

  1. Review
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  8. Horticulture research · 2024
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  10. Knockout of eightCell surface (Amsterdam, Netherlands) · 2023
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  11. Review
  12. Review
  13. Article
  14. Article
  15. Review
  16. Spatial and Temporal Distribution of Arabinogalactan Proteins duringInternational journal of molecular sciences · 2021
    Article
  17. Maintenance of Cell Wall Integrity under High Salinity.International journal of molecular sciences · 2021
    Review
  18. Review
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

May HijaziUniversité de Toulouse; UPS; UMR 5546, Laboratoire de Recherche en Sciences Végétales; BP 42617 Auzeville, F-31326 Castanet-Tolosan, France CNRS; UMR 5546; BP 42617, F-31326 Castanet-Tolosan, France.
David RoujolUniversité de Toulouse; UPS; UMR 5546, Laboratoire de Recherche en Sciences Végétales; BP 42617 Auzeville, F-31326 Castanet-Tolosan, France CNRS; UMR 5546; BP 42617, F-31326 Castanet-Tolosan, France.
Huan Nguyen-KimUniversité de Toulouse; UPS; UMR 5546, Laboratoire de Recherche en Sciences Végétales; BP 42617 Auzeville, F-31326 Castanet-Tolosan, France CNRS; UMR 5546; BP 42617, F-31326 Castanet-Tolosan, France.
Liliana Del Rocio Cisneros CastilloDivision of Tumor Virology (F010), German Cancer Research Center DKFZ, Im Neuenheimer Feld 242, D-69120 Heidelberg, Germany.
Estelle SalandUniversité de Toulouse; UPS; UMR 5546, Laboratoire de Recherche en Sciences Végétales; BP 42617 Auzeville, F-31326 Castanet-Tolosan, France CNRS; UMR 5546; BP 42617, F-31326 Castanet-Tolosan, France.
Elisabeth JametUniversité de Toulouse; UPS; UMR 5546, Laboratoire de Recherche en Sciences Végétales; BP 42617 Auzeville, F-31326 Castanet-Tolosan, France CNRS; UMR 5546; BP 42617, F-31326 Castanet-Tolosan, France.
Cécile AlbenneUniversité de Toulouse; UPS; UMR 5546, Laboratoire de Recherche en Sciences Végétales; BP 42617 Auzeville, F-31326 Castanet-Tolosan, France CNRS; UMR 5546; BP 42617, F-31326 Castanet-Tolosan, France albenne@lrsv.ups-tlse.fr.
Laboratoire de Recherche en Sciences Végétales · FRUniversité Fédérale de Toulouse Midi-Pyrénées · FRGerman Cancer Research Center · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

BACKGROUND AND

aimsArabinogalactan protein 31 (AGP31) is a remarkable plant cell-wall protein displaying a multi-domain organization unique in Arabidopsis thaliana: it comprises a predicted signal peptide (SP), a short AGP domain of seven amino acids, a His-stretch, a Pro-rich domain and a PAC (PRP-AGP containing Cys) domain. AGP31 displays different O-glycosylation patterns with arabinogalactans on the AGP domain and Hyp-O-Gal/Ara-rich motifs on the Pro-rich domain. AGP31 has been identified as an abundant protein in cell walls of etiolated hypocotyls, but its function has not been investigated thus far. Literature data suggest that AGP31 may interact with cell-wall components. The purpose of the present study was to identify AGP31 partners to gain new insight into its function in cell walls.

methodsNitrocellulose membranes were prepared by spotting different polysaccharides, which were either obtained commercially or extracted from cell walls of Arabidopsis thaliana and Brachypodium distachyon. After validation of the arrays, in vitro interaction assays were carried out by probing the membranes with purified native AGP31 or recombinant PAC-V5-6xHis. In addition, dynamic light scattering (DLS) analyses were carried out on an AGP31 purified fraction. KEY

resultsIt was demonstrated that AGP31 interacts through its PAC domain with galactans that are branches of rhamnogalacturonan I. This is the first experimental evidence that a PAC domain, also found as an entire protein or a domain of AGP31 homologues, can bind carbohydrates. AGP31 was also found to bind methylesterified polygalacturonic acid, possibly through its His-stretch. Finally, AGP31 was able to interact with itself in vitro through its PAC domain. DLS data showed that AGP31 forms aggregates in solution, corroborating the hypothesis of an auto-assembly.

conclusionsThese results allow the proposal of a model of interactions of AGP31 with different cell-wall components, in which AGP31 participates in complex supra-molecular scaffolds. Such scaffolds could contribute to the strengthening of cell walls of quickly growing organs such as etiolated hypocotyls.

Indexed as

ArabidopsisArabidopsis ProteinsBrachypodiumCell WallGalactansGlycosylationModels, BiologicalMucoproteinsNicotianaPectinsPlant ProteinsPolysaccharidesProtein BindingProtein Structure, TertiaryRecombinant ProteinsSeedlingsAGP31 protein, ArabidopsisArabidopsis Proteinsarabinogalactanarabinogalactan proteinsGalactansMucoproteinsPectinsPlant Proteinspolygalacturonic acidPolysaccharidesRecombinant Proteinsrhamnogalacturonan IAGP31Arabidopsis thalianaarabinogalactan protein 31Brachypodium distachyonglycoproteinnon-covalent interactionsPAC domainplant cell wallpolysaccharides

Identifiers

PMID24685714
PMCPMC4195544
OpenAlexW2329974636

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.