Evidence map›Paper›PMID 24685147›Full record

ArticleStructure (London, England : 1993)2014

Distinct docking and stabilization steps of the Pseudopilus conformational transition path suggest rotational assembly of type IV pilus-like fibers.

Mangayarkarasi Nivaskumar, Guillaume Bouvier, Manuel Campos, Nathalie Nadeau, Xiong Yu, Edward H Egelman, Michael Nilges, Olivera Francetic

Open access · bronzeAbstract read
In one paragraph

Article in Structure (London, England : 1993), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
4.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 49 citations in OpenAlex.

  1. Article
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  13. Cryo-EM of bacterial pili and archaeal flagellar filaments.Current opinion in structural biology · 2017
    Review
  14. Article
  15. Structure andeLife · 2017
    Article
  16. Article
  17. Archaeal flagellin combines a bacterial type IV pilin domain with an Ig-like domain.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Mangayarkarasi NivaskumarMolecular Genetics Unit, Institut Pasteur, 25 rue du Dr. Roux, 75724 Paris, Cedex 15, France; CNRS ERL3526, 25 rue du Dr. Roux, 75724 Paris, Cedex 15, France; University Paris VII, 25 rue du Dr. Roux, 75724 Paris, Cedex 15, France.
Guillaume BouvierStructural Bioinformatics Unit, Institut Pasteur, 25 rue du Dr. Roux, 75724 Paris, Cedex 15, France; CNRS UMR3528, 25 rue du Dr. Roux, 75724 Paris, Cedex 15, France.
Manuel CamposMolecular Genetics Unit, Institut Pasteur, 25 rue du Dr. Roux, 75724 Paris, Cedex 15, France; CNRS ERL3526, 25 rue du Dr. Roux, 75724 Paris, Cedex 15, France; University Paris VII, 25 rue du Dr. Roux, 75724 Paris, Cedex 15, France.
Nathalie NadeauMolecular Genetics Unit, Institut Pasteur, 25 rue du Dr. Roux, 75724 Paris, Cedex 15, France; CNRS ERL3526, 25 rue du Dr. Roux, 75724 Paris, Cedex 15, France.
Xiong YuDepartment of Biochemistry and Molecular Genetics, University of Virginia, Charlottesville, VA 22908, USA.
Edward H EgelmanDepartment of Biochemistry and Molecular Genetics, University of Virginia, Charlottesville, VA 22908, USA.
Michael NilgesStructural Bioinformatics Unit, Institut Pasteur, 25 rue du Dr. Roux, 75724 Paris, Cedex 15, France; CNRS UMR3528, 25 rue du Dr. Roux, 75724 Paris, Cedex 15, France.
Olivera FranceticMolecular Genetics Unit, Institut Pasteur, 25 rue du Dr. Roux, 75724 Paris, Cedex 15, France; CNRS ERL3526, 25 rue du Dr. Roux, 75724 Paris, Cedex 15, France. Electronic address: ofrancet@pasteur.fr.
Centre National de la Recherche Scientifique · FRUniversity of Virginia · US

Funding

Methods for the Analysis of Helical Macromolecular ComplexesR01EB001567 · NIBIB · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI EGELMAN, EDWARD H. · 2003 to 2014
$3.6M
NIBIB NIH HHS EB001567NIBIB NIH HHS R01 EB001567
6 · The paper itself

Abstract

The closely related bacterial type II secretion (T2S) and type IV pilus (T4P) systems are sophisticated machines that assemble dynamic fibers promoting protein transport, motility, or adhesion. Despite their essential role in virulence, the molecular mechanisms underlying helical fiber assembly remain unknown. Here, we use electron microscopy and flexible modeling to study conformational changes of PulG pili assembled by the Klebsiella oxytoca T2SS. Neural network analysis of 3,900 pilus models suggested a transition path toward low-energy conformations driven by progressive increase in fiber helical twist. Detailed predictions of interprotomer contacts along this path were tested by site-directed mutagenesis, pilus assembly, and protein secretion analyses. We demonstrate that electrostatic interactions between adjacent protomers (P-P+1) in the membrane drive pseudopilin docking, while P-P+3 and P-P+4 contacts determine downstream fiber stabilization steps. These results support a model of a spool-like assembly mechanism for fibers of the T2SS-T4P superfamily.

Indexed as

DimerizationFimbriae, BacterialFimbriae ProteinsKlebsiella oxytocaMicroscopy, ElectronModels, MolecularMolecular Docking SimulationFimbriae Proteins

Identifiers

PMID24685147
PMCPMC4016124
OpenAlexW2028575265

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.