Evidence map›Paper›PMID 24685137›Full record

ArticleCell reports2014

A histone methylation network regulates transgenerational epigenetic memory in C. elegans.

Eric L Greer, Sara E Beese-Sims, Emily Brookes, Ruggero Spadafora, Yun Zhu, Scott B Rothbart, David Aristizábal-Corrales, Shuzhen Chen, Aimee I Badeaux, Qiuye Jin and 4 more

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 104 papers.

0numbers the graph read from it
0cells of the map it votes in
104citing papers in PubMed
6.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

104 citing papers in PubMed, 179 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Review
  7. Article
  8. Parental age selection in C. elegans influences progeny stress resistance capacity.The journals of gerontology. Series A, Biological sciences and medical sciences · 2025
    Article
  9. Article
  10. Article
  11. Ectopic transcription due to inherited histone methylation may interfere with the ongoing function of differentiated neurons.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  12. Review
  13. Article
  14. Review
  15. Epigenetic Echoes: Bridging Nature, Nurture, and Healing Across Generations.International journal of molecular sciences · 2025
    Review
  16. Review
  17. Caenorhabditis Elegans as a Model for Environmental Epigenetics.Current environmental health reports · 2025
    Review
  18. Article
  19. Chemical Genetics inACS chemical biology · 2024
    Article
  20. Review

44 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 1 country.

Eric L GreerDepartment of Cell Biology, Harvard Medical School, Boston, MA 02115, USA; Division of Newborn Medicine, Children's Hospital Boston, 300 Longwood Avenue, Boston, MA 02115, USA.
Sara E Beese-SimsDepartment of Genetics, Harvard Medical School, Boston, MA 02115, USA.
Emily BrookesDepartment of Cell Biology, Harvard Medical School, Boston, MA 02115, USA; Division of Newborn Medicine, Children's Hospital Boston, 300 Longwood Avenue, Boston, MA 02115, USA.
Ruggero SpadaforaDivision of Newborn Medicine, Children's Hospital Boston, 300 Longwood Avenue, Boston, MA 02115, USA.
Yun ZhuDepartment of Chemistry and Biochemistry, University of California, San Diego, La Jolla, CA 92093, USA.
Scott B RothbartDepartment of Biochemistry and Biophysics, Lineberger Comprehensive Cancer Center, The University of North Carolina at Chapel Hill School of Medicine, Chapel Hill, NC 27599, USA.
David Aristizábal-CorralesDepartment of Cell Biology, Harvard Medical School, Boston, MA 02115, USA; Division of Newborn Medicine, Children's Hospital Boston, 300 Longwood Avenue, Boston, MA 02115, USA.
Shuzhen ChenDepartment of Cell Biology, Harvard Medical School, Boston, MA 02115, USA; Division of Newborn Medicine, Children's Hospital Boston, 300 Longwood Avenue, Boston, MA 02115, USA.
Aimee I BadeauxDepartment of Cell Biology, Harvard Medical School, Boston, MA 02115, USA; Division of Newborn Medicine, Children's Hospital Boston, 300 Longwood Avenue, Boston, MA 02115, USA.
Qiuye JinDepartment of Cell Biology, Harvard Medical School, Boston, MA 02115, USA; Division of Newborn Medicine, Children's Hospital Boston, 300 Longwood Avenue, Boston, MA 02115, USA.
Wei WangDepartment of Chemistry and Biochemistry, University of California, San Diego, La Jolla, CA 92093, USA.
Brian D StrahlDepartment of Biochemistry and Biophysics, Lineberger Comprehensive Cancer Center, The University of North Carolina at Chapel Hill School of Medicine, Chapel Hill, NC 27599, USA.
Monica P ColaiácovoDepartment of Genetics, Harvard Medical School, Boston, MA 02115, USA.
Yang ShiDepartment of Cell Biology, Harvard Medical School, Boston, MA 02115, USA; Division of Newborn Medicine, Children's Hospital Boston, 300 Longwood Avenue, Boston, MA 02115, USA. Electronic address: yshi@hms.harvard.edu.
Boston Children's Hospital · USHarvard University · USUniversity of California, San Diego · USUniversity of North Carolina at Chapel Hill · US

Funding

SYNAPTIC MECHANISMS IN HIPPOCAMPAL EPILEPTOGENESISP30HD018655 · NICHD · CHILDREN'S HOSPITAL BOSTON · PI WOOLF, CLIFFORD J · 1985 to 2015
$26.2M
Integrated Training in Cancer Model SystemsT32CA009156 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI DER, CHANNING J. · 1985 to 2020
$19.7M
Synaptonemal Complex Assembly and Function in MeiosisR01GM072551 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI Monica P Colaiacovo · 2005 to 2026
$7.5M
Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Ann E. Rougvie · 2012 to 2026
$7.5M
Novel epigenetic mechanisms in neuronal development and cognitive functionR01MH096066 · NIMH · BOSTON CHILDREN'S HOSPITAL · PI ARLOTTA, PAOLA, POMEROY, SCOTT LOREN · 2012 to 2022
$6.1M
TRANSCRIPTION COFACTORS IN DIFFERENTIATIONR01GM058012 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI SHI, YANG · 1999 to 2011
$4.1M
Histone Demethylases and Regulation of Chromatin and Transcription in EukaryotesR01CA118487 · NCI · HARVARD MEDICAL SCHOOL · PI SHI, YANG · 2006 to 2017
$3.6M
Role of Set2 and H3 methylation in chromatin functionR01GM068088 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI STRAHL, BRIAN D · 2003 to 2017
$3.4M
Molecular mechanisms of germline DNA repair and DNA damage responseR01GM105853 · NIGMS · HARVARD MEDICAL SCHOOL · PI COLAIACOVO, MONICA P · 2014 to 2017
$1.3M
Sparse Structure Identification from High-Dimensional Epigenomic DataR01GM096194 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ZHU, JI · 2010 to 2013
$1.0M
Mechanisms Regulating DNA Methylation Maintenance in ChromatinR00CA181343 · NCI · VAN ANDEL RESEARCH INSTITUTE · PI ROTHBART, SCOTT · 2015 to 2017
$746k
Identifying the molecular mechanisms of transgenerational epigenetic inheritanceR00AG043550 · NIA · BOSTON CHILDREN'S HOSPITAL · PI GREER, ERIC LIEBERMAN · 2015 to 2017
$737k
NCI NIH HHS CA118487NCI NIH HHS K99 CA181343NCI NIH HHS R00 CA181343NCI NIH HHS R01 CA118487NCI NIH HHS T32 CA009156NIA NIH HHS K99 AG043550NIA NIH HHS R00 AG043550NICHD NIH HHS P30 HD018655NIGMS NIH HHS F32 GM100515NIGMS NIH HHS GM058012NIGMS NIH HHS R01 GM058012NIGMS NIH HHS R01 GM068088NIGMS NIH HHS R01 GM072551NIGMS NIH HHS R01 GM096194NIGMS NIH HHS R01 GM105853NIH HHS P40 OD010440NIMH NIH HHS MH096066NIMH NIH HHS R01 MH096066
6 · The paper itself

Abstract

How epigenetic information is transmitted from generation to generation remains largely unknown. Deletion of the C. elegans histone H3 lysine 4 dimethyl (H3K4me2) demethylase spr-5 leads to inherited accumulation of the euchromatic H3K4me2 mark and progressive decline in fertility. Here, we identified multiple chromatin-modifying factors, including H3K4me1/me2 and H3K9me3 methyltransferases, an H3K9me3 demethylase, and an H3K9me reader, which either suppress or accelerate the progressive transgenerational phenotypes of spr-5 mutant worms. Our findings uncover a network of chromatin regulators that control the transgenerational flow of epigenetic information and suggest that the balance between euchromatic H3K4 and heterochromatic H3K9 methylation regulates transgenerational effects on fertility.

Indexed as

AnimalsCaenorhabditis elegansCaenorhabditis elegans ProteinsChromatinEpigenesis, GeneticEpigenomicsHistonesMethylationMethyltransferasesOxidoreductases, N-DemethylatingCaenorhabditis elegans ProteinsChromatinHistonesMethyltransferasesOxidoreductases, N-DemethylatingSPR-5 protein, C elegans

Identifiers

PMID24685137
PMCPMC4012616
OpenAlexW2169827045

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.