Evidence map›Paper›PMID 24683389›Full record

ArticleMathematics and visualization2009

Topology Based Selection and Curation of Level Sets.

Chandrajit Bajaj, Andrew Gillette, Samrat Goswami

Abstract read
In one paragraph

Article in Mathematics and visualization, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Geometric Detection Algorithms for Cavities on Protein Surfaces in Molecular Graphics: A Survey.Computer graphics forum : journal of the European Association for Computer Graphics · 2017
    Article
  2. Article
  3. Article
  4. Modeling Cardiovascular Anatomy from Patient-Specific Imaging Data.Computational methods in applied sciences (Springer) · 2009
    Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Chandrajit BajajCenter for Computational Visualization, University of Texas at Austin Austin, Texas 78712.
Andrew GilletteCenter for Computational Visualization, University of Texas at Austin Austin, Texas 78712.
Samrat GoswamiCenter for Computational Visualization, University of Texas at Austin Austin, Texas 78712.

Funding

MEDICAL SCIENTIST TRAININGT32GM007308 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI PHILIPS, MARK REID · 1985 to 2019
$23.2M
TOWARD A COMPUTATION CENTER FOR BIOMOLECULAR COMPLEXES: STRUCTURAL BIOLOGYP20RR020647 · NCRR · BAYLOR COLLEGE OF MEDICINE · PI CHIU, WAH · 2004 to 2006
$1.8M
A New Approach to Rapid Protein-Protein DockingR01GM073087 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI BAJAJ, CHANDRAJIT L · 2006 to 2008
$1.3M
Software Maintenance for Biomolecular ComplexesR01EB004873 · NIBIB · UNIVERSITY OF TEXAS AT AUSTIN · PI BAJAJ, CHANDRAJIT L · 2007 to 2010
$1.2M
Hierarchical Methods for Large BioMolecular ComplexesR01GM074258 · NIGMS · UNIVERSITY OF TEXAS AUSTIN · PI BAJAJ, CHANDRAJIT L · 2005 to 2010
$778k
NCRR NIH HHS P20 RR020647NIBIB NIH HHS R01 EB004873NIGMS NIH HHS R01 GM073087NIGMS NIH HHS R01 GM074258NIGMS NIH HHS T32 GM007308
6 · The paper itself

Abstract

The selection of appropriate level sets for the quantitative visualization of three dimensional imaging or simulation data is a problem that is both fundamental and essential. The selected level set needs to satisfy several topological and geometric constraints to be useful for subsequent quantitative processing and visualization. For an initial selection of an isosurface, guided by contour tree data structures, we detect the topological features by computing stable and unstable manifolds of the critical points of the distance function induced by the isosurface. We further enhance the description of these features by associating geometric attributes with them. We then rank the attributed features and provide a handle to them for curation of the topological anomalies.

Identifiers

PMID24683389
PMCPMC3966476

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.