Evidence map›Paper›PMID 24682944›Full record

ArticleJournal of biomolecular NMR2014

Performance tuning non-uniform sampling for sensitivity enhancement of signal-limited biological NMR.

Melissa R Palmer, Broc R Wenrich, Phillip Stahlfeld, David Rovnyak

Abstract read
In one paragraph

Article in Journal of biomolecular NMR, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
  2. Article
  3. Rapid quantitativeRSC advances · 2022
    Article
  4. Article
  5. Article
  6. 2D J-correlated proton NMR experiments for structural fingerprinting of biotherapeutics.Journal of magnetic resonance (San Diego, Calif. : 1997) · 2019
    Article
  7. Article
  8. Article
  9. Article
  10. Efficient assignment and NMR analysis of an intact virus using sequential side-chain correlations and DNP sensitization.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  11. Subrandom methods for multidimensional nonuniform sampling.Journal of magnetic resonance (San Diego, Calif. : 1997) · 2016
    Article
  12. Convex accelerated maximum entropy reconstruction.Journal of magnetic resonance (San Diego, Calif. : 1997) · 2016
    Article
  13. Deterministic multidimensional nonuniform gap sampling.Journal of magnetic resonance (San Diego, Calif. : 1997) · 2015
    Article
  14. Article
  15. Sensitivity of nonuniform sampling NMR.The journal of physical chemistry. B · 2015
    Article
  16. Nonuniform sampling and non-Fourier signal processing methods in multidimensional NMR.Progress in nuclear magnetic resonance spectroscopy · 2014
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Melissa R PalmerDepartment of Chemistry, Bucknell University, Lewisburg, PA, 17837, USA.
Broc R Wenrich
Phillip Stahlfeld
David Rovnyak

Funding

Structural Biology of the Catalytic Domain of Bacteriophage T4 PrimaseR15GM084443 · NIGMS · BUCKNELL UNIVERSITY · PI ROVNYAK, DAVID SHERMAN · 2009 to 2009
$206k
NIGMS NIH HHS R15 GM084443NIGMS NIH HHS R15GM084443
6 · The paper itself

Abstract

Non-uniform sampling (NUS) has been established as a route to obtaining true sensitivity enhancements when recording indirect dimensions of decaying signals in the same total experimental time as traditional uniform incrementation of the indirect evolution period. Theory and experiments have shown that NUS can yield up to two-fold improvements in the intrinsic signal-to-noise ratio (SNR) of each dimension, while even conservative protocols can yield 20-40% improvements in the intrinsic SNR of NMR data. Applications of biological NMR that can benefit from these improvements are emerging, and in this work we develop some practical aspects of applying NUS nD-NMR to studies that approach the traditional detection limit of nD-NMR spectroscopy. Conditions for obtaining high NUS sensitivity enhancements are considered here in the context of enabling (1)H,(15)N-HSQC experiments on natural abundance protein samples and (1)H,(13)C-HMBC experiments on a challenging natural product. Through systematic studies we arrive at more precise guidelines to contrast sensitivity enhancements with reduced line shape constraints, and report an alternative sampling density based on a quarter-wave sinusoidal distribution that returns the highest fidelity we have seen to date in line shapes obtained by maximum entropy processing of non-uniformly sampled data.

Indexed as

Nuclear Magnetic Resonance, BiomolecularProteinsReproducibility of ResultsSignal-To-Noise RatioProteins

Identifiers

PMID24682944
PMCPMC4114507

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.