Evidence map›Paper›PMID 24682326›Full record

ArticleJournal of bacteriology2014

Phylogeny poorly predicts the utility of a challenging horizontally transferred gene in Methylobacterium strains.

Joshua K Michener, Stéphane Vuilleumier, Françoise Bringel, Christopher J Marx

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 33 citations in OpenAlex.

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  8. Benefit of transferred mutations is better predicted by the fitness of recipients than by their ecological or genetic relatedness.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
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  12. Review
  13. Article
  14. Bacterial Strain Diversity Within Wounds.Advances in wound care · 2015
    Review
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Joshua K MichenerDepartment of Organismic and Evolutionary Biology, Harvard University, Cambridge, Massachusetts, USA.
Stéphane Vuilleumier
Françoise Bringel
Christopher J Marx
Centre National de la Recherche Scientifique · FRHarvard University · US

Funding

Experimental evolution recapitulating adaptation after horizontal gene transferF32GM106629 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI MICHENER, JOSHUA KIERAN · 2013 to 2015
$113k
NIGMS NIH HHS F32 GM106629
6 · The paper itself

Abstract

Horizontal gene transfer plays a crucial role in microbial evolution. While much is known about the mechanisms that determine whether physical DNA can be transferred into a new host, the factors determining the utility of the transferred genes are less clear. We have explored this issue using dichloromethane consumption in Methylobacterium strains. Methylobacterium extorquens DM4 expresses a dichloromethane dehalogenase (DcmA) that has been acquired through horizontal gene transfer and allows the strain to grow on dichloromethane as the sole carbon and energy source. We transferred the dcmA gene into six Methylobacterium strains that include both close and distant evolutionary relatives. The transconjugants varied in their ability to grow on dichloromethane, but their fitness on dichloromethane did not correlate with the phylogeny of the parental strains or with any single tested physiological factor. This work highlights an important limiting factor in horizontal gene transfer, namely, the capacity of the recipient strain to accommodate the stress and metabolic disruption resulting from the acquisition of a new enzyme or pathway. Understanding these limitations may help to rationalize historical examples of horizontal transfer and aid deliberate genetic transfers in biotechnology for metabolic engineering.

Indexed as

PhylogenyGene Expression Regulation, BacterialGene Expression Regulation, EnzymologicGene Transfer, HorizontalHydrogen-Ion ConcentrationLyasesMethylene ChlorideMethylobacteriumdichloromethane dehalogenaseLyasesMethylene Chloride

Identifiers

PMID24682326
PMCPMC4010993
OpenAlexW2138431824

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.