Evidence map›Paper›PMID 24682084›Full record

ArticlePloS one2014

Arabidopsis transcriptome analysis reveals key roles of melatonin in plant defense systems.

Sarah Weeda, Na Zhang, Xiaolei Zhao, Grace Ndip, Yangdong Guo, Gregory A Buck, Conggui Fu, Shuxin Ren

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 118 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
118citing papers in PubMed, 1 pooled it
8.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

118 citing papers in PubMed, 1 synthesis or guideline pooled it, 382 citations in OpenAlex.

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58 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Sarah WeedaAgriculture Research Station, Virginia State University, Petersburg, Virginia, United States of America.
Na ZhangCollege of Agriculture and Biotechnology, China Agricultural University, Beijing, P. R. China.
Xiaolei ZhaoTianjin Crop Science Institute, Tianjin Academy of Agricultural Science, Tianjin, P. R. China.
Grace NdipDepartment of Chemistry, Virginia State University, Petersburg, Virginia, United States of America.
Yangdong GuoCollege of Agriculture and Biotechnology, China Agricultural University, Beijing, P. R. China.
Gregory A BuckCenter of the Study of Biological Complexity, Virginia Commonwealth University, Richmond, Virginia, United States of America.
Conggui FuTianjin Crop Science Institute, Tianjin Academy of Agricultural Science, Tianjin, P. R. China.
Shuxin RenAgriculture Research Station, Virginia State University, Petersburg, Virginia, United States of America.
Virginia State University · USChina Agricultural University · CNTianjin Academy of Agricultural Sciences · CNVirginia Commonwealth University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Melatonin is a ubiquitous molecule and exists across kingdoms including plant species. Studies on melatonin in plants have mainly focused on its physiological influence on growth and development, and on its biosynthesis. Much less attention has been drawn to its affect on genome-wide gene expression. To comprehensively investigate the role(s) of melatonin at the genomics level, we utilized mRNA-seq technology to analyze Arabidopsis plants subjected to a 16-hour 100 pM (low) and 1 mM (high) melatonin treatment. The expression profiles were analyzed to identify differentially expressed genes. 100 pM melatonin treatment significantly affected the expression of only 81 genes with 51 down-regulated and 30 up-regulated. However, 1 mM melatonin significantly altered 1308 genes with 566 up-regulated and 742 down-regulated. Not all genes altered by low melatonin were affected by high melatonin, indicating different roles of melatonin in regulation of plant growth and development under low and high concentrations. Furthermore, a large number of genes altered by melatonin were involved in plant stress defense. Transcript levels for many stress receptors, kinases, and stress-associated calcium signals were up-regulated. The majority of transcription factors identified were also involved in plant stress defense. Additionally, most identified genes in ABA, ET, SA and JA pathways were up-regulated, while genes pertaining to auxin responses and signaling, peroxidases, and those associated with cell wall synthesis and modifications were mostly down-regulated. Our results indicate critical roles of melatonin in plant defense against various environmental stresses, and provide a framework for functional analysis of genes in melatonin-mediated signaling pathways.

Indexed as

ArabidopsisArabidopsis ProteinsDown-RegulationGene Expression ProfilingGene Expression Regulation, PlantMelatoninSignal TransductionStress, PhysiologicalTranscriptomeUp-RegulationArabidopsis ProteinsMelatonin

Identifiers

PMID24682084
PMCPMC3969325
OpenAlexW1979935839

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.