Evidence map›Paper›PMID 24681716›Full record

ArticlePloS one2014

Excavation of Pid3 orthologs with differential resistance spectra to Magnaporthe oryzae in rice resource.

Xiao Xu, Qiming Lv, Junjun Shang, Zhiqian Pang, Zhuangzhi Zhou, Jing Wang, Guanghuai Jiang, Yong Tao, Qian Xu, Xiaobing Li and 4 more

Abstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
  2. Current status of molecular rice breeding for durable and broad-spectrum resistance to major diseases and insect pests.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024
    Review
  3. Article
  4. Article
  5. Article
  6. BjuWRR1, a CC-NB-LRR gene identified in Brassica juncea, confers resistance to white rust caused by Albugo candida.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2019
    Article
  7. Article
  8. Pid3-I1 is a race-specific partial-resistance allele at the Pid3 blast resistance locus in rice.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2019
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Functional divergence of duplicated genes results in a novel blast resistance gene Pi50 at the Pi2/9 locus.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2015
    Article
  14. Article
  15. Review
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Xiao XuNational Engineering Laboratory for Tree Breeding, Beijing Forestry University, Beijing, China; State Key Laboratory of Plant Genomics, National Centre for Plant Gene Research, Institute of Genetics and Developmental Biology, Chinese Academy of Science, Bejing, China.
Qiming LvState Key Laboratory of Plant Genomics, National Centre for Plant Gene Research, Institute of Genetics and Developmental Biology, Chinese Academy of Science, Bejing, China; Rice Research Institute, Sichuan Agricultural University, Chengdu, China; National Key Laboratory of Hybrid Rice, Changsha, Hunan, China.
Junjun ShangKey Laboratory of Molecular Biology and Gene Engineering, College of Life Science, Nanchang University, Nanchang, China.
Zhiqian PangBeijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China.
Zhuangzhi ZhouState Key Laboratory of Plant Genomics, National Centre for Plant Gene Research, Institute of Genetics and Developmental Biology, Chinese Academy of Science, Bejing, China.
Jing WangState Key Laboratory of Plant Genomics, National Centre for Plant Gene Research, Institute of Genetics and Developmental Biology, Chinese Academy of Science, Bejing, China.
Guanghuai JiangState Key Laboratory of Plant Genomics, National Centre for Plant Gene Research, Institute of Genetics and Developmental Biology, Chinese Academy of Science, Bejing, China.
Yong TaoBeijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China.
Qian XuNational Engineering Laboratory for Tree Breeding, Beijing Forestry University, Beijing, China.
Xiaobing LiState Key Laboratory of Plant Genomics, National Centre for Plant Gene Research, Institute of Genetics and Developmental Biology, Chinese Academy of Science, Bejing, China.
Xianfeng ZhaoState Key Laboratory of Plant Genomics, National Centre for Plant Gene Research, Institute of Genetics and Developmental Biology, Chinese Academy of Science, Bejing, China.
Shigui LiRice Research Institute, Sichuan Agricultural University, Chengdu, China.
Jichen XuNational Engineering Laboratory for Tree Breeding, Beijing Forestry University, Beijing, China.
Lihuang ZhuState Key Laboratory of Plant Genomics, National Centre for Plant Gene Research, Institute of Genetics and Developmental Biology, Chinese Academy of Science, Bejing, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Twenty-six orthologs of the rice blast resistance gene Pid3 from cultivated varieties and wild rice accessions distributed in different areas were cloned by allele mining. Sequence analysis showed that while each of the orthologous genes from indica varieties and most wild accessions encodes a complete NBS-LRR protein, each of the proteins encoded by those from japonica varieties and few wild rice accessions presents a premature termination. Eleven of the 26 orthologs were selected for blast resistance testing by transforming into the blast susceptible rice variety TP309, respectively. Inoculation of 23 M. oryzae strains collected from diverse regions of China to the respective transgenic plants revealed that 6 Pid3 orthologs showed susceptible to all the tested strains, while the other 5 orthologs showed differential resistance spectra in a gradually spectrum-widen order as Pid3-W3, Pid3-W4, Pid3-I3, Pid3-W5 and Pid3-I1. Amino acid sequences alignment of these orthologs indicated that the sequence diversities between the blast resistance orthologs were mostly located in the LRR domain such as the substitutions of Q694H,D856H,Q896R,D899E etc. However, the differences between the resistance orthologs and the susceptible ones were mostly located in the NBS domain. The present experiments provide an example of that the ortholog evaluation of plant R genes could be an efficient way to expand the rice blast resistance and some other plant disease resistance as well for breeding.

Indexed as

AllelesAmino Acid SequenceBreedingChinaDisease ResistanceGenes, PlantMagnaportheOryzaPhylogenyPlant DiseasesPlant ProteinsPlants, Genetically ModifiedSequence Analysis, DNAPlant Proteins

Identifiers

PMID24681716
PMCPMC3969318

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.