Evidence map›Paper›PMID 24681625›Full record

ArticlePloS one2014

HIV-2 integrase polymorphisms and longitudinal genotypic analysis of HIV-2 infected patients failing a raltegravir-containing regimen.

Joana Cavaco-Silva, Ana Abecasis, Ana Cláudia Miranda, José Poças, Jorge Narciso, Maria João Águas, Fernando Maltez, Isabel Almeida, Isabel Germano, António Diniz and 5 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 21 citations in OpenAlex.

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  7. Antimicrobial agents and chemotherapy · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 8 institutions in 2 countries.

Joana Cavaco-SilvaCentro de Malária e Outras Doenças Tropicais, Unidade de Microbiologia Médica, Instituto de Higiene e Medicina Tropical, Universidade Nova de Lisboa, Lisboa, Portugal.
Ana AbecasisCentro de Malária e Outras Doenças Tropicais, Unidade de Saúde Pública Internacional e Bioestatística, Instituto de Higiene e Medicina Tropical, Universidade Nova de Lisboa, Lisboa, Portugal.
Ana Cláudia MirandaServiço de Doenças Infecciosas, Centro Hospitalar de Lisboa Ocidental, Lisboa, Portugal.
José PoçasHospital de São Bernardo, Centro Hospitalar de Setúbal, Setúbal, Portugal.
Jorge NarcisoHospital dos SAMS, Lisboa, Portugal.
Maria João ÁguasHospital Garcia de Orta, Almada, Portugal.
Fernando MaltezHospital Curry Cabral, Centro Hospitalar de Lisboa Central, Lisboa, Portugal.
Isabel AlmeidaHospital de Santo António, Centro Hospitalar do Porto, Porto, Portugal.
Isabel GermanoHospital de São José, Centro Hospitalar de Lisboa Central, Lisboa, Portugal.
António DinizHospital Pulido Valente, Centro Hospitalar de Lisboa Norte, Lisboa, Portugal.
Maria de Fátima GonçalvesLaboratório de Microbiologia Clínica e Biologia Molecular, Serviço de Patologia Clínica (SPC), Centro Hospitalar de Lisboa Ocidental, Lisboa, Portugal.
Perpétua GomesLaboratório de Microbiologia Clínica e Biologia Molecular, Serviço de Patologia Clínica (SPC), Centro Hospitalar de Lisboa Ocidental, Lisboa, Portugal; Centro de Malária e Outras Doenças Tropicais, Instituto de Higiene e Medicina Tropical, Universidade Nova de Lisboa, Lisboa, Portugal; Centro de Investigação Interdisciplinar Egas Moniz (CiiEM), Instituto Superior de Ciências da Saúde Sul, Caparica, Portugal.
Celso CunhaCentro de Malária e Outras Doenças Tropicais, Unidade de Microbiologia Médica, Instituto de Higiene e Medicina Tropical, Universidade Nova de Lisboa, Lisboa, Portugal.
Ricardo Jorge CamachoCentro de Malária e Outras Doenças Tropicais, Instituto de Higiene e Medicina Tropical, Universidade Nova de Lisboa, Lisboa, Portugal; Rega Institute for Medical Research, Katholieke Universiteit Leuven (KU Leuven), Leuven, Belgium.
Portuguese HIV-2 Resistance Study Group
Universidade Nova de Lisboa · PTCentro Hospitalar de Lisboa Ocidental · PTCentro Hospitalar de Lisboa Central · PTCentro Hospitalar do Porto · PTHospital Curry Cabral · PTHospital de São Bernardo · PTHospital Garcia de Orta · PTHospital Pulido Valente · PT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To characterize the HIV-2 integrase gene polymorphisms and the pathways to resistance of HIV-2 patients failing a raltegravir-containing regimen, we studied 63 integrase strand transfer inhibitors (INSTI)-naïve patients, and 10 heavily pretreated patients exhibiting virological failure while receiving a salvage raltegravir-containing regimen. All patients were infected by HIV-2 group A. 61.4% of the integrase residues were conserved, including the catalytic motif residues. No INSTI-major resistance mutations were detected in the virus population from naïve patients, but two amino acids that are secondary resistance mutations to INSTIs in HIV-1 were observed. The 10 raltegravir-experienced patients exhibited resistance mutations via three main genetic pathways: N155H, Q148R, and eventually E92Q - T97A. The 155 pathway was preferentially used (7/10 patients). Other mutations associated to raltegravir resistance in HIV-1 were also observed in our HIV-2 population (V151I and D232N), along with several novel mutations previously unreported. Data retrieved from this study should help build a more robust HIV-2-specific algorithm for the genotypic interpretation of raltegravir resistance, and contribute to improve the clinical monitoring of HIV-2-infected patients.

Indexed as

Drug Resistance, ViralGenotypeHIV-1HIV-2HIV InfectionsHIV IntegraseHIV Integrase InhibitorsHumansPolymorphism, GeneticPyrrolidinonesRaltegravir PotassiumHIV IntegraseHIV Integrase Inhibitorsp31 integrase protein, Human immunodeficiency virus 2PyrrolidinonesRaltegravir Potassium

Identifiers

PMID24681625
PMCPMC3969368
OpenAlexW2121887954

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.