Evidence map›Paper›PMID 24681537›Full record

ArticleNature chemical biology2014

Lysine 2-hydroxyisobutyrylation is a widely distributed active histone mark.

Lunzhi Dai, Chao Peng, Emilie Montellier, Zhike Lu, Yue Chen, Haruhiko Ishii, Alexandra Debernardi, Thierry Buchou, Sophie Rousseaux, Fulai Jin and 6 more

Abstract read
PubMed Publisher
In one paragraph

Article in Nature chemical biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 261 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
261citing papers in PubMed, 1 pooled it
13.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

261 citing papers in PubMed, 1 synthesis or guideline pooled it, 457 citations in OpenAlex.

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201 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 7 institutions in 2 countries.

Lunzhi DaiBen May Department of Cancer Research, The University of Chicago, Chicago, Illinois, USA.
Chao PengBen May Department of Cancer Research, The University of Chicago, Chicago, Illinois, USA.
Emilie MontellierINSERM, U823, Université Joseph Fourier-Grenoble 1, Institut Albert Bonniot, Faculté de Médecine, La Tronche, France.
Zhike LuBen May Department of Cancer Research, The University of Chicago, Chicago, Illinois, USA.
Yue ChenBen May Department of Cancer Research, The University of Chicago, Chicago, Illinois, USA.
Haruhiko IshiiLudwig Institute for Cancer Research and Department of Cellular and Molecular Medicine, University of California-San Diego School of Medicine, La Jolla, California, USA.
Alexandra DebernardiINSERM, U823, Université Joseph Fourier-Grenoble 1, Institut Albert Bonniot, Faculté de Médecine, La Tronche, France.
Thierry BuchouINSERM, U823, Université Joseph Fourier-Grenoble 1, Institut Albert Bonniot, Faculté de Médecine, La Tronche, France.
Sophie RousseauxINSERM, U823, Université Joseph Fourier-Grenoble 1, Institut Albert Bonniot, Faculté de Médecine, La Tronche, France.
Fulai JinLudwig Institute for Cancer Research and Department of Cellular and Molecular Medicine, University of California-San Diego School of Medicine, La Jolla, California, USA.
Benjamin R SabariLaboratory of Chromatin Biology and Epigenetics, The Rockefeller University, New York, New York, USA.
Zhiyou DengBen May Department of Cancer Research, The University of Chicago, Chicago, Illinois, USA.
C David AllisLaboratory of Chromatin Biology and Epigenetics, The Rockefeller University, New York, New York, USA.
Bing RenLudwig Institute for Cancer Research and Department of Cellular and Molecular Medicine, University of California-San Diego School of Medicine, La Jolla, California, USA.
Saadi KhochbinINSERM, U823, Université Joseph Fourier-Grenoble 1, Institut Albert Bonniot, Faculté de Médecine, La Tronche, France.
Yingming ZhaoBen May Department of Cancer Research, The University of Chicago, Chicago, Illinois, USA.
University of Chicago · USUniversity of California, San Diego · USInserm · FRRockefeller University · USInstitut pour l'avancée des biosciences · FRUniversité Grenoble Alpes · FRUniversité Joseph Fourier · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We report the identification of a new type of histone mark, lysine 2-hydroxyisobutyrylation (Khib), and identify the mark at 63 human and mouse histone Khib sites, including 27 unique lysine sites that are not known to be modified by lysine acetylation (Kac) and lysine crotonylation (Kcr). This histone mark was initially identified by MS and then validated by chemical and biochemical methods. Histone Khib shows distinct genomic distributions from histone Kac or histone Kcr during male germ cell differentiation. Using chromatin immunoprecipitation sequencing, gene expression analysis and immunodetection, we show that in male germ cells, H4K8hib is associated with active gene transcription in meiotic and post-meiotic cells. In addition, H4K8ac-associated genes are included in and constitute only a subfraction of H4K8hib-labeled genes. The histone Khib mark is conserved and widely distributed, has high stoichiometry and induces a large structural change. These findings suggest its critical role on the regulation of chromatin functions.

Indexed as

Amino Acid SequenceAnimalsEpigenesis, GeneticGenomeHeLa CellsHistonesHumansHydroxybutyratesLysineMaleMass SpectrometryMiceMolecular Sequence DataSpermatozoa2-hydroxyisobutyric acidHistonesHydroxybutyratesLysine

Identifiers

PMID24681537
OpenAlexW2046301798

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.