Evidence map›Paper›PMID 24680668›Full record

ArticleJournal of molecular biology2014

A non-active-site SET domain surface crucial for the interaction of MLL1 and the RbBP5/Ash2L heterodimer within MLL family core complexes.

Stephen A Shinsky, Michael Hu, Valarie E Vought, Sarah B Ng, Michael J Bamshad, Jay Shendure, Michael S Cosgrove

Abstract read
In one paragraph

Article in Journal of molecular biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 50 citations in OpenAlex.

  1. Review
  2. Article
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  4. Multistate structures of the MLL1-WRAD complex bound to H2B-ubiquitinated nucleosome.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  5. Review
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  8. Review
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  15. Review
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  17. Article
  18. Writing, erasing and reading histone lysine methylations.Experimental & molecular medicine · 2017
    Review
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  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Stephen A ShinskyDepartment of Biochemistry and Molecular Biology, SUNY Upstate Medical University, Syracuse, NY 13210, USA.
Michael HuDepartment of Biology, Syracuse University, Syracuse, NY 13210, USA.
Valarie E VoughtDepartment of Biology, Syracuse University, Syracuse, NY 13210, USA.
Sarah B NgDepartment of Genome Sciences, University of Washington Seattle, Seattle, WA 98105, USA.
Michael J BamshadDepartment of Genome Sciences, University of Washington Seattle, Seattle, WA 98105, USA; Department of Pediatrics, University of Washington Seattle, Seattle, WA 98195, USA.
Jay ShendureDepartment of Genome Sciences, University of Washington Seattle, Seattle, WA 98105, USA.
Michael S CosgroveDepartment of Biochemistry and Molecular Biology, SUNY Upstate Medical University, Syracuse, NY 13210, USA. Electronic address: cosgrovm@upstate.edu.
University of Washington · USSUNY Upstate Medical University · USSyracuse University · US

Funding

Molecular Mechanisms for the Assembly and Regulation of the MLL1 Core ComplexR01CA140522 · NCI · UPSTATE MEDICAL UNIVERSITY · PI COSGROVE, MICHAEL S. · 2010 to 2019
$3.6M
NCI NIH HHS 1R01CA140522NCI NIH HHS R01 CA140522
6 · The paper itself

Abstract

The mixed lineage leukemia-1 (MLL1) enzyme is a histone H3 lysine 4 (H3K4) monomethyltransferase and has served as a paradigm for understanding the mechanism of action of the human SET1 family of enzymes that include MLL1-MLL4 and SETd1a,b. Dimethylation of H3K4 requires a sub-complex including WRAD (WDR5, RbBP5, Ash2L, and DPY-30), which binds to each SET1 family member forming a minimal core complex that is required for multiple lysine methylation. We recently demonstrated that WRAD is a novel histone methyltransferase that preferentially catalyzes H3K4 dimethylation in a manner that is dependent on an unknown non-active-site surface from the MLL1 SET domain. Recent genome sequencing studies have identified a number of human disease-associated missense mutations that localize to the SET domains of several MLL family members. In this investigation, we mapped many of these mutations onto the three-dimensional structure of the SET domain and noticed that a subset of MLL2 (KMT2D, ALR, MLL4)-associated Kabuki syndrome missense mutations map to a common solvent-exposed surface that is not expected to alter enzymatic activity. We introduced these mutations into the MLL1 SET domain and observed that all are defective for H3K4 dimethylation by the MLL1 core complex, which is associated with a loss of the ability of MLL1 to interact with WRAD or with the RbBP5/Ash2L heterodimer. Our results suggest that amino acids from this surface, which we term the Kabuki interaction surface or KIS, are required for formation of a second active site within SET1 family core complexes.

Indexed as

Protein Interaction Domains and MotifsAmino Acid SequenceCatalytic DomainDNA-Binding ProteinsHistone-Lysine N-MethyltransferaseHumansModels, MolecularMolecular Sequence DataMutant ProteinsMutation, MissenseMyeloid-Lymphoid Leukemia ProteinNuclear ProteinsProtein BindingProtein ConformationProtein Interaction MappingTranscription FactorsASH2L protein, humanDNA-Binding ProteinsHistone-Lysine N-MethyltransferaseKMT2A protein, humanMutant ProteinsMyeloid-Lymphoid Leukemia ProteinNuclear ProteinsRBBP5 protein, humanTranscription Factorshistone methylationKabuki syndromemixed lineage leukemiaRbBP5/Ash2LSET domain

Identifiers

PMID24680668
PMCPMC4066448
OpenAlexW2031128646

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.