Evidence map›Paper›PMID 24678451›Full record

ArticleStem cell reports2014

NANOG is multiply phosphorylated and directly modified by ERK2 and CDK1 in vitro.

Justin Brumbaugh, Jason D Russell, Pengzhi Yu, Michael S Westphall, Joshua J Coon, James A Thomson

Open access · goldAbstract read
In one paragraph

Article in Stem cell reports, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 57 citations in OpenAlex.

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  14. Review
  15. ERK signalling: a master regulator of cell behaviour, life and fate.Nature reviews. Molecular cell biology · 2020
    Review
  16. Article
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  19. X-chromosome dosage as a modulator of pluripotency, signalling and differentiation?Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2017
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Justin BrumbaughStem Cells and Regenerative Medicine, Morgridge Institute for Research, Madison, WI 53715, USA.
Jason D RussellDepartment of Chemistry, University of Wisconsin-Madison, Madison, WI 53706, USA.
Pengzhi YuStem Cells and Regenerative Medicine, Morgridge Institute for Research, Madison, WI 53715, USA.
Michael S WestphallDepartment of Chemistry, University of Wisconsin-Madison, Madison, WI 53706, USA ; Department of Biomolecular Chemistry, University of Wisconsin-Madison, Madison, WI 53706, USA.
Joshua J CoonDepartment of Chemistry, University of Wisconsin-Madison, Madison, WI 53706, USA ; Department of Biomolecular Chemistry, University of Wisconsin-Madison, Madison, WI 53706, USA.
James A ThomsonStem Cells and Regenerative Medicine, Morgridge Institute for Research, Madison, WI 53715, USA ; Department of Cell & Regenerative Biology, University of Wisconsin-Madison, Madison, WI 53706, USA ; Department of Molecular, Cellular & Developmental Biology, University of California, Santa Barbara, Santa Barbara, CA 93106, USA.
University of Wisconsin–Madison · USMorgridge Institute for Research · USUniversity of California, Santa Barbara · US

Funding

The Epigenotype of Human ES CellsP01GM081629 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI THOMSON, JAMES ALEXANDER · 2008 to 2012
$8.9M
Sequential Ion/Ion Reactions for Large Peptide and Whole Protein CharacterizationR01GM080148 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI COON, JOSHUA J · 2007 to 2015
$3.0M
NIGMS NIH HHS P01 GM081629NIGMS NIH HHS P01GM081629NIGMS NIH HHS R01 GM080148NIGMS NIH HHS R01GM080148
6 · The paper itself

Abstract

NANOG is a divergent homeobox protein and a core component of the transcriptional circuitry that sustains pluripotency and self-renewal. Although NANOG has been extensively studied on the transcriptional level, little is known regarding its posttranslational regulation, likely due to its low abundance and challenging physical properties. Here, we identify eleven phosphorylation sites on endogenous human NANOG, nine of which mapped to single amino acids. To screen for the signaling molecules that impart these modifications, we developed the multiplexed assay for kinase specificity (MAKS). MAKS simultaneously tests activity for up to ten kinases while directly identifying the substrate and exact site of phosphorylation. Using MAKS, we discovered site-specific phosphorylation by ERK2 and CDK1/CyclinA2, providing a putative link between key signaling pathways and NANOG.

Indexed as

Amino Acid SequenceCDC2 Protein KinaseCells, CulturedChromatography, High Pressure LiquidCyclin A2Embryonic Stem CellsHomeodomain ProteinsHumansMitogen-Activated Protein Kinase 1Molecular Sequence DataNanog Homeobox ProteinPhosphopeptidesPhosphorylationSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationCDC2 Protein KinaseCyclin A2Homeodomain ProteinsMitogen-Activated Protein Kinase 1Nanog Homeobox ProteinNANOG protein, humanPhosphopeptides

Identifiers

PMID24678451
PMCPMC3966117
OpenAlexW2141219113

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.