Evidence map›Paper›PMID 24675095›Full record

ArticleToxicological sciences : an official journal of the Society of Toxicology2014

Knockdown of a zebrafish aryl hydrocarbon receptor repressor (AHRRa) affects expression of genes related to photoreceptor development and hematopoiesis.

Neelakanteswar Aluru, Matthew J Jenny, Mark E Hahn

Open access · bronzeAbstract read
In one paragraph

Article in Toxicological sciences : an official journal of the Society of Toxicology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Article
  3. Transcriptome of D14 in vivo x in vitro bovine embryos: is there any difference?In vitro cellular & developmental biology. Animal · 2021
    Article
  4. A Review of the Functional Roles of the Zebrafish Aryl Hydrocarbon Receptors.Toxicological sciences : an official journal of the Society of Toxicology · 2020
    Review
  5. ACells · 2020
    Article
  6. Article
  7. The Aryl Hydrocarbon Receptor and the Nervous System.International journal of molecular sciences · 2018
    Review
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Neelakanteswar AluruBiology Department, Woods Hole Oceanographic Institution, Woods Hole, Massachusetts 02543.
Matthew J Jenny
Mark E Hahn
Woods Hole Oceanographic Institution · USUniversity of Alabama · US

Funding

AHR Signaling in Mammalian and Non-Mammalian ModelsR01ES006272 · NIEHS · WOODS HOLE OCEANOGRAPHIC INSTITUTION · PI HAHN, MARK E · 1999 to 2014
$4.1M
Metal-Regulatory Factor 1 (MTF-1) Role in Development and Stress ResponseR00ES017044 · NIEHS · UNIVERSITY OF ALABAMA IN TUSCALOOSA · PI JENNY, MATTHEW J. · 2009 to 2011
$729k
NIEHS NIH HHS R00 ES017044NIEHS NIH HHS R00ES017044NIEHS NIH HHS R01 ES006272NIEHS NIH HHS R01ES006272
6 · The paper itself

Abstract

The aryl hydrocarbon receptor repressor (AHRR) is a transcriptional repressor of aryl hydrocarbon receptor (AHR) and hypoxia-inducible factor (HIF) and is regulated by an AHR-dependent mechanism. Zebrafish (Danio rerio) possess two AHRR paralogs; AHRRa regulates constitutive AHR signaling during development, whereas AHRRb regulates polyaromatic hydrocarbon-induced gene expression. However, little is known about the endogenous roles and targets of AHRRs. The objective of this study was to elucidate the role of AHRRs during zebrafish development using a loss-of-function approach followed by gene expression analysis. Zebrafish embryos were microinjected with morpholino oligonucleotides against AHRRa or AHRRb to knockdown AHRR protein expression. At 72 h postfertilization (hpf), microarray analysis revealed that the expression of 279 and 116 genes was altered by knockdown of AHRRa and AHRRb, respectively. In AHRRa-morphant embryos, 97 genes were up-regulated and 182 genes were down-regulated. Among the down-regulated genes were several related to photoreceptor function, including cone-specific genes such as several opsins (opn1sw1, opn1sw2, opn1mw1, and opn1lw2), phosphodiesterases (pde6H and pde6C), retinol binding protein (rbp4l), phosducin, and arrestins. Down-regulation was confirmed by RT-PCR and with samples from an independent experiment. The four genes tested (opn1sw1, pde6H, pde6C, and arr3b) were not inducible by 2,3,7,8-tetrachlorodibenzo-p-dioxin. AHRRa knockdown also caused up-regulation of embryonic hemoglobin (hbbe3), suggesting a role for AHRR in regulating hematopoiesis. Knockdown of AHRRb caused up-regulation of 31 genes and down-regulation of 85 genes, without enrichment for any specific biological process. Overall, these results suggest that AHRRs may have important roles in development, in addition to their roles in regulating xenobiotic signaling.

Indexed as

Retinal Cone Photoreceptor CellsAnimalsDown-RegulationEmbryo, NonmammalianGene DuplicationGene Expression Regulation, DevelopmentalGene Knockdown TechniquesHematopoiesisHumansMorpholinosPolychlorinated DibenzodioxinsRepressor ProteinsUp-RegulationZebrafishZebrafish Proteinsahrra protein, zebrafishahrrb protein, zebrafishMorpholinosPolychlorinated DibenzodioxinsRepressor ProteinsZebrafish ProteinsAHRAHRRaryl hydrocarbon receptorconesdevelopmentdioxinmicroarraysmorpholino oligonucleotidesopsinsrepressorTCDDzebrafish

Identifiers

PMID24675095
PMCPMC4031623
OpenAlexW2101049024

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.