Evidence map›Paper›PMID 24674868›Full record

ArticleScience (New York, N.Y.)2014

Total synthesis of a functional designer eukaryotic chromosome.

Narayana Annaluru, Héloïse Muller, Leslie A Mitchell, Sivaprakash Ramalingam, Giovanni Stracquadanio, Sarah M Richardson, Jessica S Dymond, Zheng Kuang, Lisa Z Scheifele, Eric M Cooper and 70 more

Erratum issuedAbstract read
In one paragraph

Article in Science (New York, N.Y.), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 238 papers.

0numbers the graph read from it
0cells of the map it votes in
238citing papers in PubMed
35.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

238 citing papers in PubMed, 557 citations in OpenAlex.

  1. Review
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  5. Article
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  10. Article
  11. Article
  12. Phage Therapy forAntibiotics (Basel, Switzerland) · 2025
    Review
  13. Scaling DNA engineering.Trends in biotechnology · 2025
    Review
  14. Gene circuit-based sensors.Fundamental research · 2025
    Review
  15. Article
  16. The design and engineering of synthetic genomes.Nature reviews. Genetics · 2025
    Review
  17. Article
  18. Article
  19. Article
  20. Review

178 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

80 authors at 4 institutions in 2 countries.

Narayana AnnaluruDepartment of Environmental Health Sciences, Johns Hopkins University (JHU) School of Public Health, Baltimore, MD 21205, USA.
Héloïse Muller
Leslie A Mitchell
Sivaprakash Ramalingam
Giovanni Stracquadanio
Sarah M Richardson
Jessica S Dymond
Zheng Kuang
Lisa Z Scheifele
Eric M Cooper
Yizhi Cai
Karen Zeller
Neta Agmon
Jeffrey S Han
Michalis Hadjithomas
Jennifer Tullman
Katrina Caravelli
Kimberly Cirelli
Zheyuan Guo
Viktoriya London
Apurva Yeluru
Sindurathy Murugan
Karthikeyan Kandavelou
Nicolas Agier
Gilles Fischer
Kun Yang
J Andrew Martin
Murat Bilgel
Pavlo Bohutski
Kristin M Boulier
Brian J Capaldo
Joy Chang
Kristie Charoen
Woo Jin Choi
Peter Deng
James E DiCarlo
Judy Doong
Jessilyn Dunn
Jason I Feinberg
Christopher Fernandez
Charlotte E Floria
David Gladowski
Pasha Hadidi
Isabel Ishizuka
Javaneh Jabbari
Calvin Y L Lau
Pablo A Lee
Sean Li
Denise Lin
Matthias E Linder
Jonathan Ling
Jaime Liu
Jonathan Liu
Mariya London
Henry Ma
Jessica Mao
Jessica E McDade
Alexandra McMillan
Aaron M Moore
Won Chan Oh
Yu Ouyang
Ruchi Patel
Marina Paul
Laura C Paulsen
Judy Qiu
Alex Rhee
Matthew G Rubashkin
Ina Y Soh
Nathaniel E Sotuyo
Venkatesh Srinivas
Allison Suarez
Andy Wong
Remus Wong
Wei Rose Xie
Yijie Xu
Allen T Yu
Romain Koszul
Joel S Bader
Jef D Boeke
Srinivasan Chandrasegaran
Johns Hopkins University · USNYU Langone Health · USLoyola University Maryland · USUniversity of Edinburgh · GB

Funding

Using budding yeast to study LINE (L1) retrotranspositionR01GM090192 · NIGMS · TULANE UNIVERSITY OF LOUISIANA · PI HAN, JEFFREY S · 2010 to 2014
$1.4M
DEVELOPING ZFN'S AS MOLECULAR TOOLS FOR TARGETED INTEGRATIONR01GM077291 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI CHANDRASEGARAN, SRINIVASAN · 2007 to 2010
$1.4M
NIGMS NIH HHS GM077291NIGMS NIH HHS R01 GM077291NIGMS NIH HHS R01 GM090192Wellcome Trust 092076
6 · The paper itself

Abstract

Rapid advances in DNA synthesis techniques have made it possible to engineer viruses, biochemical pathways and assemble bacterial genomes. Here, we report the synthesis of a functional 272,871-base pair designer eukaryotic chromosome, synIII, which is based on the 316,617-base pair native Saccharomyces cerevisiae chromosome III. Changes to synIII include TAG/TAA stop-codon replacements, deletion of subtelomeric regions, introns, transfer RNAs, transposons, and silent mating loci as well as insertion of loxPsym sites to enable genome scrambling. SynIII is functional in S. cerevisiae. Scrambling of the chromosome in a heterozygous diploid reveals a large increase in a-mater derivatives resulting from loss of the MATα allele on synIII. The complete design and synthesis of synIII establishes S. cerevisiae as the basis for designer eukaryotic genome biology.

Indexed as

Chromosomes, FungalBase SequenceDNA, FungalGenes, FungalGenetic FitnessGenome, FungalGenomic InstabilityIntronsMolecular Sequence DataMutationPolymerase Chain ReactionRNA, FungalRNA, TransferSaccharomyces cerevisiaeSequence Analysis, DNASequence DeletionDNA, FungalRNA, FungalRNA, Transfer

Identifiers

PMID24674868
PMCPMC4033833
OpenAlexW2124208385

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.