Evidence map›Paper›PMID 24673644›Full record

ArticleMolecular microbiology2014

OmpA and OmpC are critical host factors for bacteriophage Sf6 entry in Shigella.

Kristin N Parent, Marcella L Erb, Giovanni Cardone, Katrina Nguyen, Eddie B Gilcrease, Natalia B Porcek, Joe Pogliano, Timothy S Baker, Sherwood R Casjens

Open access · bronzeAbstract read
In one paragraph

Article in Molecular microbiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed
7.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed, 98 citations in OpenAlex.

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  10. Diversity and phage sensitivity to phages of porcine enterotoxigenicApplied and environmental microbiology · 2024
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  15. Efficacy of Repeated Applications of Bacteriophages onPathogens (Basel, Switzerland) · 2022
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  18. Host Range Expansion ofJournal of virology · 2022
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  19. Article
  20. Mosaic Evolution of Beta-Barrel-Porin-Encoding Genes inApplied and environmental microbiology · 2022
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3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Kristin N ParentDepartment of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI, 48824, USA; Department of Chemistry & Biochemistry, University of California, San Diego, La Jolla, CA, 92093, USA.
Marcella L Erb
Giovanni Cardone
Katrina Nguyen
Eddie B Gilcrease
Natalia B Porcek
Joe Pogliano
Timothy S Baker
Sherwood R Casjens
University of California, San Diego · USUniversity of Utah · USMichigan State University · US

Funding

TRD #3: An automated and streamlined pipeline for in-situ molecular microscopyP41GM103310 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI DE MARCO, ALEX, KIEFT, JEFFREY S · 2012 to 2021
$14.7M
WORKSHOPS AND TRAININGP41RR017573 · NCRR · SCRIPPS RESEARCH INSTITUTE, THE · PI CARRAGHER, BRIDGET OLIVIA · 2002 to 2011
$14.2M
Microscopy &Image Analysis of Unstained MacromoleculesR37GM033050 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI BAKER, TIMOTHY S · 2004 to 2013
$5.6M
MICROSCOPY &IMAGE ANALYSIS OF UNSTAINED MACROMOLECULESR01GM033050 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI BAKER, TIMOTHY S · 1985 to 2017
$4.3M
DNA segregation during Bacillus growth and developmentR01GM073898 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI POGLIANO, JOSEPH A · 2006 to 2013
$2.4M
TRANSMISSION ELECTRON MICROSCOPE: STRUCTURAL &CELL BIOL: MEMBRANE TRANSPORT, GAS10RR020016 · NCRR · UNIVERSITY OF CALIFORNIA SAN DIEGO · PI BAKER, TIMOTHY S · 2004 to 2004
$2.0M
DNA packaging and delivery by dsDNA virusesR01AI074825 · NIAID · UNIVERSITY OF UTAH · PI CASJENS, SHERWOOD R. · 2008 to 2012
$1.8M
DNA packaging and delivery by dsDNA virusesR56AI074825 · NIAID · UNIVERSITY OF UTAH · PI CASJENS, SHERWOOD R. · 2007 to 2007
$374k
NCRR NIH HHS 1S10 RR-020016NCRR NIH HHS P41 RR017573NCRR NIH HHS S10 RR020016NIAID NIH HHS AI074825NIAID NIH HHS R01 AI074825NIAID NIH HHS R56 AI074825NIGMS NIH HHS P41 GM103310NIGMS NIH HHS R01 GM033050NIGMS NIH HHS R01 GM-073898NIGMS NIH HHS R01 GM073898NIGMS NIH HHS R37 GM-033050NIGMS NIH HHS R37 GM033050
6 · The paper itself

Abstract

Despite being essential for successful infection, the molecular cues involved in host recognition and genome transfer of viruses are not completely understood. Bacterial outer membrane proteins A and C co-purify in lipid vesicles with bacteriophage Sf6, implicating both outer membrane proteins as potential host receptors. We determined that outer membrane proteins A and C mediate Sf6 infection by dramatically increasing its rate and efficiency. We performed a combination of in vivo studies with three omp null mutants of Shigella flexneri, including classic phage plaque assays and time-lapse fluorescence microscopy to monitor genome ejection at the single virion level. Cryo-electron tomography of phage 'infecting' outer membrane vesicles shows the tail needle contacting and indenting the outer membrane. Lastly, in vitro ejection studies reveal that lipopolysaccharide and outer membrane proteins are both required for Sf6 genome release. We conclude that Sf6 phage entry utilizes either outer membrane proteins A or C, with outer membrane protein A being the preferred receptor.

Indexed as

Bacterial Outer Membrane ProteinsBacteriophagesElectron Microscope TomographyGenome, ViralLipopolysaccharidesMicroscopy, FluorescenceMutationShigella flexneriVirionBacterial Outer Membrane ProteinsLipopolysaccharides

Identifiers

PMID24673644
PMCPMC4034267
OpenAlexW2152696945

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.