Evidence map›Paper›PMID 24671084›Full record

ArticleThe ISME journal2014

Elevated nitrate enriches microbial functional genes for potential bioremediation of complexly contaminated sediments.

Meiying Xu, Qin Zhang, Chunyu Xia, Yuming Zhong, Guoping Sun, Jun Guo, Tong Yuan, Jizhong Zhou, Zhili He

Erratum issuedAbstract read
In one paragraph

Article in The ISME journal, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed.

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  7. Endophytic Fungal Diversity of Mangrove FernsPlants (Basel, Switzerland) · 2024
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  13. Ecological influence by colonization of fluoride-resistantFrontiers in cellular and infection microbiology · 2022
    Article
  14. Nitrogen species control the interaction between NOEnvironmental science and pollution research international · 2021
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

9 authors.

Meiying Xu1] Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application, Guangdong Institute of Microbiology, Guangzhou, China [2] State Key Laboratory of Applied Microbiology Southern China, Guangzhou, China.
Qin Zhang1] Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application, Guangdong Institute of Microbiology, Guangzhou, China [2] College of Environmental Sciences and Engineering, Guilin University of Technology, Guilin, China.
Chunyu XiaGuangdong Provincial Key Laboratory of Microbial Culture Collection and Application, Guangdong Institute of Microbiology, Guangzhou, China.
Yuming Zhong1] Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application, Guangdong Institute of Microbiology, Guangzhou, China [2] State Key Laboratory of Applied Microbiology Southern China, Guangzhou, China.
Guoping Sun1] Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application, Guangdong Institute of Microbiology, Guangzhou, China [2] State Key Laboratory of Applied Microbiology Southern China, Guangzhou, China.
Jun Guo1] Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application, Guangdong Institute of Microbiology, Guangzhou, China [2] State Key Laboratory of Applied Microbiology Southern China, Guangzhou, China.
Tong YuanDepartment of Botany and Microbiology, Institute for Environmental Genomics, University of Oklahoma, Norman, OK, USA.
Jizhong ZhouDepartment of Botany and Microbiology, Institute for Environmental Genomics, University of Oklahoma, Norman, OK, USA.
Zhili HeDepartment of Botany and Microbiology, Institute for Environmental Genomics, University of Oklahoma, Norman, OK, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nitrate is an important nutrient and electron acceptor for microorganisms, having a key role in nitrogen (N) cycling and electron transfer in anoxic sediments. High-nitrate inputs into sediments could have a significant effect on N cycling and its associated microbial processes. However, few studies have been focused on the effect of nitrate addition on the functional diversity, composition, structure and dynamics of sediment microbial communities in contaminated aquatic ecosystems with persistent organic pollutants (POPs). Here we analyzed sediment microbial communities from a field-scale in situ bioremediation site, a creek in Pearl River Delta containing a variety of contaminants including polybrominated diphenyl ethers (PBDEs) and polycyclic aromatic hydrocarbons (PAHs), before and after nitrate injection using a comprehensive functional gene array (GeoChip 4.0). Our results showed that the sediment microbial community functional composition and structure were markedly altered, and that functional genes involved in N-, carbon (C)-, sulfur (S)-and phosphorus (P)- cycling processes were highly enriched after nitrate injection, especially those microorganisms with diverse metabolic capabilities, leading to potential in situ bioremediation of the contaminated sediment, such as PBDE and PAH reduction/degradation. This study provides new insights into our understanding of sediment microbial community responses to nitrate addition, suggesting that indigenous microorganisms could be successfully stimulated for in situ bioremediation of POPs in contaminated sediments with nitrate addition.

Indexed as

Genes, MicrobialBiodegradation, EnvironmentalCarbonEcosystemGeologic SedimentsNitratesPhosphorusSulfurWater PollutantsCarbonNitratesPhosphorusSulfurWater Pollutants

Identifiers

PMID24671084
PMCPMC4139732

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.