Evidence map›Paper›PMID 24670657›Full record

ArticleNature2014

Disruption of Mediator rescues the stunted growth of a lignin-deficient Arabidopsis mutant.

Nicholas D Bonawitz, Jeong Im Kim, Yuki Tobimatsu, Peter N Ciesielski, Nickolas A Anderson, Eduardo Ximenes, Junko Maeda, John Ralph, Bryon S Donohoe, Michael Ladisch and 1 more

Abstract read
PubMed Publisher
In one paragraph

Article in Nature, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 150 papers.

0numbers the graph read from it
0cells of the map it votes in
150citing papers in PubMed
18.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

150 citing papers in PubMed, 367 citations in OpenAlex.

  1. Article
  2. Article
  3. From Defense Executor to Engineering Target: Harnessing Lignin for Crop Resistance.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Review
  4. Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Metabolic engineering ofPlant biotechnology (Tokyo, Japan) · 2024
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. MeJA-induced hairy roots inFrontiers in plant science · 2024
    Article

90 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Nicholas D Bonawitz1] Department of Biochemistry, Purdue University, West Lafayette, Indiana 47907, USA [2] Dow AgroSciences LLC, 9330 Zionsville Road, Indianapolis, Indiana 46268, USA (N.D.B.); Department of Agronomy, University of Wisconsin-Madison, 1575 Linden Drive, Madison, Wisconsin 53706, USA (J.M.).
Jeong Im KimDepartment of Biochemistry, Purdue University, West Lafayette, Indiana 47907, USA.
Yuki TobimatsuDepartment of Biochemistry, University of Wisconsin-Madison, Madison, Wisconsin 53706, USA.
Peter N CiesielskiBiosciences Center, National Renewable Energy Laboratory, Golden, Colorado 80401, USA.
Nickolas A AndersonDepartment of Biochemistry, Purdue University, West Lafayette, Indiana 47907, USA.
Eduardo XimenesDepartment of Agricultural and Biological Engineering and the Laboratory of Renewable Resources Engineering, Purdue University, West Lafayette, Indiana 47907, USA.
Junko Maeda1] Department of Biochemistry, Purdue University, West Lafayette, Indiana 47907, USA [2] Dow AgroSciences LLC, 9330 Zionsville Road, Indianapolis, Indiana 46268, USA (N.D.B.); Department of Agronomy, University of Wisconsin-Madison, 1575 Linden Drive, Madison, Wisconsin 53706, USA (J.M.).
John Ralph1] Department of Biochemistry, University of Wisconsin-Madison, Madison, Wisconsin 53706, USA [2] Department of Biological Systems Engineering, University of Wisconsin-Madison, Madison, Wisconsin 53706, USA [3] DOE Great Lakes Bioenergy Research Center, and Wisconsin Energy Institute, University of Wisconsin-Madison, Madison, Wisconsin 53726, USA.
Bryon S DonohoeBiosciences Center, National Renewable Energy Laboratory, Golden, Colorado 80401, USA.
Michael Ladisch1] Department of Agricultural and Biological Engineering and the Laboratory of Renewable Resources Engineering, Purdue University, West Lafayette, Indiana 47907, USA [2] Weldon School of Biomedical Engineering, Purdue University, West Lafayette, Indiana 47907, USA.
Clint ChappleDepartment of Biochemistry, Purdue University, West Lafayette, Indiana 47907, USA.
Purdue University West Lafayette · USNational Renewable Energy Laboratory · USUniversity of Wisconsin–Madison · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Lignin is a phenylpropanoid-derived heteropolymer important for the strength and rigidity of the plant secondary cell wall. Genetic disruption of lignin biosynthesis has been proposed as a means to improve forage and bioenergy crops, but frequently results in stunted growth and developmental abnormalities, the mechanisms of which are poorly understood. Here we show that the phenotype of a lignin-deficient Arabidopsis mutant is dependent on the transcriptional co-regulatory complex, Mediator. Disruption of the Mediator complex subunits MED5a (also known as REF4) and MED5b (also known as RFR1) rescues the stunted growth, lignin deficiency and widespread changes in gene expression seen in the phenylpropanoid pathway mutant ref8, without restoring the synthesis of guaiacyl and syringyl lignin subunits. Cell walls of rescued med5a/5b ref8 plants instead contain a novel lignin consisting almost exclusively of p-hydroxyphenyl lignin subunits, and moreover exhibit substantially facilitated polysaccharide saccharification. These results demonstrate that guaiacyl and syringyl lignin subunits are largely dispensable for normal growth and development, implicate Mediator in an active transcriptional process responsible for dwarfing and inhibition of lignin biosynthesis, and suggest that the transcription machinery and signalling pathways responding to cell wall defects may be important targets to include in efforts to reduce biomass recalcitrance.

Indexed as

ArabidopsisArabidopsis ProteinsBiofuelsBiomassCelluloseCell WallGene Expression Regulation, PlantLigninMediator ComplexMutationPhenotypePlants, Genetically ModifiedProtein SubunitsTranscription, GeneticArabidopsis ProteinsBiofuelsCelluloseLigninMediator ComplexProtein Subunits

Identifiers

PMID24670657
OpenAlexW1999279227

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.