Evidence map›Paper›PMID 24668806›Full record

ArticleThe Journal of biological chemistry2014

Fragments of bacterial endoglycosidase s and immunoglobulin g reveal subdomains of each that contribute to deglycosylation.

Emma V Dixon, Jolyon K Claridge, David J Harvey, Kavitha Baruah, Xiaojie Yu, Snezana Vesiljevic, Susan Mattick, Laura K Pritchard, Benjamin Krishna, Christopher N Scanlan and 4 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. The Journal of experimental medicine · 2019
    Article
  9. Molecular Basis of Broad SpectrumACS central science · 2019
    Article
  10. Streptococcal Endo-β-Frontiers in immunology · 2018
    Article
  11. Article
  12. Review
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 2 institutions in 1 country.

Emma V DixonFrom the Oxford Glycobiology Institute, Department of Biochemistry and emma.dixon@msdtc.ox.ac.uk.
Jolyon K ClaridgeDepartment of Biochemistry, University of Oxford, South Parks Rd., Oxford OX1 3QU, United Kingdom, and.
David J HarveyFrom the Oxford Glycobiology Institute, Department of Biochemistry and School of Life Sciences, University of Warwick, Gibbet Hill Campus, Coventry, CV4 7AL, United Kingdom.
Kavitha BaruahFrom the Oxford Glycobiology Institute, Department of Biochemistry and.
Xiaojie YuFrom the Oxford Glycobiology Institute, Department of Biochemistry and.
Snezana VesiljevicFrom the Oxford Glycobiology Institute, Department of Biochemistry and.
Susan MattickFrom the Oxford Glycobiology Institute, Department of Biochemistry and.
Laura K PritchardFrom the Oxford Glycobiology Institute, Department of Biochemistry and.
Benjamin KrishnaFrom the Oxford Glycobiology Institute, Department of Biochemistry and.
Christopher N ScanlanFrom the Oxford Glycobiology Institute, Department of Biochemistry and.
Jason R SchnellDepartment of Biochemistry, University of Oxford, South Parks Rd., Oxford OX1 3QU, United Kingdom, and.
Matthew K HigginsDepartment of Biochemistry, University of Oxford, South Parks Rd., Oxford OX1 3QU, United Kingdom, and.
Nicole ZitzmannFrom the Oxford Glycobiology Institute, Department of Biochemistry and.
Max CrispinFrom the Oxford Glycobiology Institute, Department of Biochemistry and max.crispin@bioch.ox.ac.uk.
University of Oxford · GBUniversity of Warwick · GB

Funding

Medical Research Council MC_PC_12020
6 · The paper itself

Abstract

Endoglycosidase S (EndoS) is a glycoside-hydrolase secreted by the bacterium Streptococcus pyogenes. EndoS preferentially hydrolyzes the N-linked glycans from the Fc region of IgG during infection. This hydrolysis impedes Fc functionality and contributes to the immune evasion strategy of S. pyogenes. Here, we investigate the mechanism of human serum IgG deactivation by EndoS. We expressed fragments of IgG1 and demonstrated that EndoS was catalytically active against all of them including the isolated CH2 domain of the Fc domain. Similarly, we sought to investigate which domains within EndoS could contribute to activity. Bioinformatics analysis of the domain organization of EndoS confirmed the previous predictions of a chitinase domain and leucine-rich repeat but also revealed a putative carbohydrate binding module (CBM) followed by a C-terminal region. Using expressed fragments of EndoS, circular dichroism of the isolated CBM, and a CBM-C-terminal region fusion revealed folded domains dominated by β sheet and α helical structure, respectively. Nuclear magnetic resonance analysis of the CBM with monosaccharides was suggestive of carbohydrate binding functionality. Functional analysis of truncations of EndoS revealed that, whereas the C-terminal of EndoS is dispensable for activity, its deletion impedes the hydrolysis of IgG glycans.

Indexed as

Glycoside HydrolasesGlycosylationHEK293 CellsHumansImmunoglobulin FragmentsImmunoglobulin GModels, MolecularPolysaccharidesProtein Structure, TertiarySequence DeletionStreptococcus pyogenesGlycoside HydrolasesImmunoglobulin FragmentsImmunoglobulin GPolysaccharidesAntibodyAntibody engineeringEnzyme MechanismGlycoproteinGlycosylation

Identifiers

PMID24668806
PMCPMC4022860
OpenAlexW2159493291

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.