Evidence map›Paper›PMID 24668525›Full record

ArticleThe Journal of general virology2014

Human pegivirus RNA is found in multiple blood mononuclear cells in vivo and serum-derived viral RNA-containing particles are infectious in vitro.

Ernest T Chivero, Nirjal Bhattarai, Robert T Rydze, Mark A Winters, Mark Holodniy, Jack T Stapleton

Abstract read
In one paragraph

Article in The Journal of general virology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed, 1 pooled it
3.9field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 1 synthesis or guideline pooled it, 82 citations in OpenAlex.

  1. Human Pegivirus Infection and Lymphoma Risk: A Systematic Review and Meta-analysis.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2020
    Pooled it
  2. Trial
  3. Article
  4. Article
  5. Article
  6. The Blood Virome: A new frontier in biomedical science.Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie · 2024
    Review
  7. Article
  8. Article
  9. Review
  10. Review
  11. Review
  12. Observational
  13. Extracellular Vesicles and Viruses: Two Intertwined Entities.International journal of molecular sciences · 2023
    Review
  14. Review
  15. Review
  16. Review
  17. Article
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Ernest T ChiveroDepartment of Internal Medicine, University of Iowa, Iowa City, IA 52242, USA.
Nirjal BhattaraiDepartment of Internal Medicine, University of Iowa, Iowa City, IA 52242, USA.
Robert T RydzeDepartment of Internal Medicine, University of Iowa, Iowa City, IA 52242, USA.
Mark A WintersDivision of Infectious Diseases, Stanford University School of Medicine, Stanford, CA 94305, USA.
Mark HolodniyDivision of Infectious Diseases, Stanford University School of Medicine, Stanford, CA 94305, USA.
Jack T StapletonDepartment of Microbiology, University of Iowa, Iowa City, IA 52242, USA.
Veterans Health Administration · USStanford University · USUniversity of Iowa · USVA Palo Alto Health Care System · US

Funding

GB Virus type C Natural History, Epidemiology, HIV InteractionR01AI058740 · NIAID · UNIVERSITY OF IOWA · PI STAPLETON, JACK T. · 2004 to 2012
$5.5M
The effects of hepatitis C virus (HCV) E2 protein on host immunomodulationI01BX000207 · VA · IOWA CITY VA MEDICAL CENTER · PI STAPLETON, JACK T. · 2009 to 2025
–
GB Virus C and Non-Hodgkins Lymphoma Risk and PrognosisI01CX000821 · VA · IOWA CITY VA MEDICAL CENTER · PI STAPLETON, JACK T. · 2013 to 2016
–
BLRD VA I01 BX000207CSRD VA I01 CX000821NIAID NIH HHS R01 AI058740NIAID NIH HHS R01 AI-58740
6 · The paper itself

Abstract

Human pegivirus (HPgV; previously called GB virus C/hepatitis G virus) has limited pathogenicity, despite causing persistent infection, and is associated with prolonged survival in human immunodeficiency virus-infected individuals. Although HPgV RNA is found in and produced by T- and B-lymphocytes, the primary permissive cell type(s) are unknown. We quantified HPgV RNA in highly purified CD4(+) and CD8(+) T-cells, including naïve, central memory and effector memory populations, and in B-cells (CD19(+)), NK cells (CD56(+)) and monocytes (CD14(+)) using real-time reverse transcription-PCR. Single-genome sequencing was performed on viruses within individual cell types to estimate genetic diversity among cell populations. HPgV RNA was present in CD4(+) and CD8(+) T-lymphocytes (nine of nine subjects), B-lymphocytes (seven of ten subjects), NK cells and monocytes (both four of five). HPgV RNA levels were higher in naïve (CD45RA(+)) CD4(+) cells than in central memory and effector memory cells (P<0.01). HPgV sequences were highly conserved among subjects (0.117±0.02 substitutions per site; range 0.58-0.14) and within subjects (0.006±0.003 substitutions per site; range 0.006-0.010). The non-synonymous/synonymous substitution ratio was 0.07, suggesting a low selective pressure. Carboxyfluorescein succinimidyl ester (CFSE)-labelled HPgV RNA-containing particles precipitated by a commercial exosome isolation reagent delivered CSFE to uninfected monocytes, NK cells and T- and B-lymphocytes, and HPgV RNA was transferred to PBMCs with evidence of subsequent virus replication. Thus, HPgV RNA-containing serum particles including microvesicles may contribute to delivery of HPgV to PBMCs in vivo, explaining the apparent broad tropism of this persistent human RNA virus.

Indexed as

AdultAmino Acid SequenceBase SequenceB-LymphocytesCD4-Positive T-LymphocytesCD8-Positive T-LymphocytesConserved SequenceDEAD-box RNA HelicasesFemaleFlaviviridae InfectionsGB virus CHepatitis, Viral, HumanHIV InfectionsHumansKiller Cells, NaturalLeukocytes, MononuclearDEAD-box RNA HelicasesNS3 protein, flavivirusNucleoside-TriphosphataseRNA HelicasesRNA, ViralSerine EndopeptidasesViral Nonstructural ProteinsViral Proteases

Identifiers

PMID24668525
PMCPMC4027039
OpenAlexW2042666718

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.