ArticlePlanta2014
Genetic diversity and association mapping of seed vigor in rice (Oryza sativa L.).
Article in Planta, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.
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Who cites it
49 citing papers in PubMed.
- Transcriptome and metabolome analysis of senescent rice (Oryza sativa L.) seeds: insights into the mechanism of germination vigor and seedling morphogenesis.BMC plant biology · 2025Article
- A Novel Function of GW5 on Controlling the Early Growth Vigor and its Haplotype Effect on Shoot Dry Weight and Grain Size in Rice (Oryza sativa L.).Rice (New York, N.Y.) · 2024Article
- The Function of SD1 on Shoot Length and its Pyramiding Effect on Shoot Length and Plant Height in Rice (Oryza sativa L.).Rice (New York, N.Y.) · 2024Article
- Genome-wide association mapping combined with gene-based haplotype analysis identify a novel gene for shoot length in rice (Oryza sativa L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023Article
- Integrating Association Mapping, Linkage Mapping, Fine Mapping with RNA Seq Conferring Seedling Vigor Improvement for Successful Crop Establishment in Deep Sown Direct-Seeded Rice.Rice (New York, N.Y.) · 2023Article
- Identification of Genetic Loci for Rice Seedling Mesocotyl Elongation in Both Natural and Artificial Segregating Populations.Plants (Basel, Switzerland) · 2023Article
- Progress in the study of functional genes related to direct seeding of rice.Molecular breeding : new strategies in plant improvement · 2023Review
- Mapping the Genomic Regions Controlling Germination Rate and Early Seedling Growth Parameters in Rice.Genes · 2023Article
- Screening germplasm and detecting QTLs for mesocotyl elongation trait in rice (Oryza sativa L.) by association mapping.BMC genomic data · 2023Article
- Genome-wide association studies in rice germplasm reveal significant genomic regions for root and yield-related traits under aerobic and irrigated conditions.Frontiers in plant science · 2023Article
- Genome-wide association analysis for emergence of deeply sown rice (Frontiers in plant science · 2023Article
- Growth and transcriptional response of wheat and rice to the tertiary amine BMVE.Frontiers in plant science · 2023Article
- Analysis of gene expression in early seed germination of rice: landscape and genetic regulation.BMC plant biology · 2022Article
- Genome-wide association study reveals novel QTLs and candidate genes for seed vigor in rice.Frontiers in plant science · 2022Article
- Identification of miRNAs and their target genes associated with improved maize seed vigor induced by gibberellin.Frontiers in plant science · 2022Article
- Genome-wide association mapping and gene expression analysis identifyFrontiers in plant science · 2022Article
- Unraveling the genomic regions controlling the seed vigour index, root growth parameters and germination per cent in rice.PloS one · 2022Article
- CSN improves seed vigor of aged sunflower seeds by regulating the fatty acid, glycometabolism, and abscisic acid metabolism.Journal of advanced research · 2021Article
- High Drying Temperature Accelerates Sunflower Seed Deterioration by Regulating the Fatty Acid Metabolism, Glycometabolism, and Abscisic Acid/Gibberellin Balance.Frontiers in plant science · 2021Article
- Advances in the Identification of Quantitative Trait Loci and Genes Involved in Seed Vigor in Rice.Frontiers in plant science · 2021Review
Corrections and comments
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Authors and funding
6 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Seed vigor is closely related to direct seeding in rice (Oryza sativa L.). Previous quantitative trait locus (QTL) studies for seed vigor were mainly derived from bi-parental segregating populations and no report from natural populations. In this study, association mapping for seed vigor was performed on a selected sample of 540 rice cultivars (419 from China and 121 from Vietnam). Population structure was estimated on the basis of 262 simple sequence repeat (SSR) markers. Seed vigor was evaluated by root length (RL), shoot length (SL) and shoot dry weight in 2011 and 2012. Abundant phenotypic and genetic diversities were found in the studied population. The population was divided into seven subpopulations, and the levels of linkage disequilibrium (LD) ranged from 10 to 80 cM. We identified 27 marker-trait associations involving 18 SSR markers for three traits. According to phenotypic effects for alleles of the detected QTLs, elite alleles were mined. These elite alleles could be used to design parental combinations and the expected results would be obtained by pyramiding or substituting the elite alleles per QTL (apart from possible epistatic effects). Our results demonstrate that association mapping can complement and enhance previous QTL information for marker-assisted selection and breeding by design.
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