Evidence map›Paper›PMID 24668125›Full record

ArticleClinical infectious diseases : an official publication of the Infectious Diseases Society of America2014

Molecular diagnosis of central nervous system opportunistic infections in HIV-infected Zambian adults.

Omar K Siddiqi, Musie Ghebremichael, Xin Dang, Masharip Atadzhanov, Patrick Kaonga, Michael N Khoury, Igor J Koralnik

Open access · bronzeAbstract read
In one paragraph

Article in Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed, 2 pooled it
3.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 2 syntheses or guidelines pooled it, 79 citations in OpenAlex.

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  15. Searching for new antifungals for the treatment of cryptococcosis.Revista da Sociedade Brasileira de Medicina Tropical · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Omar K SiddiqiDivision of Neuro-Virology, Beth Israel Deaconess Medical Center, Boston, Massachusetts Department of Internal Medicine, University of Zambia School of Medicine, Lusaka.
Musie GhebremichaelHarvard Medical School and Ragon Institute of Massachusetts General Hospital, Massachusetts Institute of Technology, and Harvard University, Boston.
Xin DangDivision of Neuro-Virology, Beth Israel Deaconess Medical Center, Boston, Massachusetts.
Masharip AtadzhanovDepartment of Internal Medicine, University of Zambia School of Medicine, Lusaka.
Patrick KaongaDepartment of Internal Medicine, University of Zambia School of Medicine, Lusaka.
Michael N KhouryDivision of Neuro-Virology, Beth Israel Deaconess Medical Center, Boston, Massachusetts.
Igor J KoralnikDivision of Neuro-Virology, Beth Israel Deaconess Medical Center, Boston, Massachusetts.
Beth Israel Deaconess Medical Center · USUniversity of Zambia · ZMHarvard University · US

Funding

The impact of HIV viral diversity and cellular immunity on HIV pathogenesisP30AI060354 · NIAID · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI ROBERT A. PARKER · 2004 to 2026
$94.4M
Fogarty International Clinical Research Scholars Support Center @ Vanderbilt-AAMCR24TW007988 · FIC · VANDERBILT UNIVERSITY · PI VERMUND, STEN H. · 2007 to 2011
$27.6M
Role of Inflammation in Progressive Multifocal LeukoencephalopathyR01NS047029 · NINDS · RUSH UNIVERSITY MEDICAL CENTER · PI KORALNIK, IGOR J. · 2004 to 2018
$6.4M
Pathogenesis of a JC Virus Variant in Pyramidal NeuronsR01NS074995 · NINDS · RUSH UNIVERSITY MEDICAL CENTER · PI KORALNIK, IGOR J. · 2012 to 2016
$1.8M
Translational applications of Progressive Multifocal Leukoencephalopathy studiesK24NS060950 · NINDS · BETH ISRAEL DEACONESS MEDICAL CENTER · PI KORALNIK, IGOR J. · 2008 to 2012
$707k
FIC NIH HHS R24 TW007988FIC NIH HHS R24TW007988NIAID NIH HHS P30 AI060354NINDS NIH HHS K24 NS060950NINDS NIH HHS K24NS060950NINDS NIH HHS NS074995NINDS NIH HHS R01 NS047029NINDS NIH HHS R01NS047029NINDS NIH HHS R01 NS074995PHS HHS P30A1060354
6 · The paper itself

Abstract

backgroundKnowledge of central nervous system (CNS) opportunistic infections (OIs) among people living with human immunodeficiency virus (HIV) in sub-Saharan Africa is limited.

methodsWe analyzed 1 cerebrospinal fluid (CSF) sample from each of 331 HIV-infected adults with symptoms suggestive of CNS OI at a tertiary care center in Zambia. We used pathogen-specific primers to detect DNA from JC virus (JCV), varicella zoster virus (VZV), cytomegalovirus (CMV), Epstein-Barr virus (EBV), herpes simplex virus (HSV) types 1 and 2, Mycobacterium tuberculosis, and Toxoplasma gondii via real-time polymerase chain reaction (PCR).

resultsThe patients' median CD4(+) T-cell count was 89 cells/µL (interquartile range, 38-191 cells/µL). Of 331 CSF samples, 189 (57.1%) had at least 1 pathogen. PCR detected DNA from EBV in 91 (27.5%) patients, M. tuberculosis in 48 (14.5%), JCV in 20 (6.0%), CMV in 20 (6.0%), VZV in 13 (3.9%), HSV-1 in 5 (1.5%), and HSV-2 and T. gondii in none. Fungal and bacteriological studies showed Cryptococcus in 64 (19.5%) patients, pneumococcus in 8 (2.4%), and meningococcus in 2 (0.6%). Multiple pathogens were found in 68 of 189 (36.0%) samples. One hundred seventeen of 331 (35.3%) inpatients died during their hospitalization. Men were older than women (median, 37 vs 34 years; P = .01), more recently diagnosed with HIV (median, 30 vs 63 days; P = .03), and tended to have a higher mortality rate (40.2% vs 30.2%; P = .07).

conclusionsCNS OIs are frequent, potentially treatable complications of AIDS in Zambia. Multiple pathogens often coexist in CSF. EBV is the most prevalent CNS organism in isolation and in coinfection. Whether it is associated with CNS disease or a marker of inflammation requires further investigation. More comprehensive testing for CNS pathogens could improve treatment and patient outcomes in Zambia.

Indexed as

AdultAIDS-Related Opportunistic InfectionsBacterial InfectionsCD4 Lymphocyte CountCentral Nervous System InfectionsCross-Sectional StudiesCryptococcosisCryptococcusDNADNA, BacterialDNA, FungalDNA, ProtozoanDNA, ViralFemaleHerpesviridaeHumansDNADNA, BacterialDNA, FungalDNA, ProtozoanDNA, Viralcerebrospinal fluidHIVopportunistic infectionsPCRZambia

Identifiers

PMID24668125
PMCPMC4036687
OpenAlexW2156311275

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.