Evidence map›Paper›PMID 24667986›Full record

ArticlePloS one2014

Novel insight into mutational landscape of head and neck squamous cell carcinoma.

Daria A Gaykalova, Elizabeth Mambo, Ashish Choudhary, Jeffery Houghton, Kalyan Buddavarapu, Tiffany Sanford, Will Darden, Alex Adai, Andrew Hadd, Gary Latham and 9 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 52 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed, 1 pooled it
6.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 1 synthesis or guideline pooled it, 87 citations in OpenAlex.

  1. Pooled it
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  3. Dual CDK and MEK Inhibition potentiates CD8Journal of experimental & clinical cancer research : CR · 2025
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

19 authors at 3 institutions in 1 country.

Daria A GaykalovaDepartment of Otolaryngology-Head and Neck Surgery, Johns Hopkins Medical Institutions, Baltimore, Maryland, United States of America.
Elizabeth MamboAsuragen Inc., Austin, Texas, United States of America.
Ashish ChoudharyAsuragen Inc., Austin, Texas, United States of America.
Jeffery HoughtonAsuragen Inc., Austin, Texas, United States of America.
Kalyan BuddavarapuAsuragen Inc., Austin, Texas, United States of America.
Tiffany SanfordAsuragen Inc., Austin, Texas, United States of America.
Will DardenAsuragen Inc., Austin, Texas, United States of America.
Alex AdaiAsuragen Inc., Austin, Texas, United States of America.
Andrew HaddAsuragen Inc., Austin, Texas, United States of America.
Gary LathamAsuragen Inc., Austin, Texas, United States of America.
Ludmila V DanilovaDepartment of Oncology and Health Science Informatics, Johns Hopkins Medical Institutions, Baltimore, Maryland, United States of America.
Justin BishopDepartment of Pathology, Johns Hopkins Medical Institutions, Baltimore, Maryland, United States of America.
Ryan J LiDepartment of Otolaryngology-Head and Neck Surgery, Johns Hopkins Medical Institutions, Baltimore, Maryland, United States of America.
William H WestraDepartment of Otolaryngology-Head and Neck Surgery, Johns Hopkins Medical Institutions, Baltimore, Maryland, United States of America; Department of Pathology, Johns Hopkins Medical Institutions, Baltimore, Maryland, United States of America.
Patrick HennesseyDepartment of Otolaryngology-Head and Neck Surgery, Johns Hopkins Medical Institutions, Baltimore, Maryland, United States of America.
Wayne M KochDepartment of Otolaryngology-Head and Neck Surgery, Johns Hopkins Medical Institutions, Baltimore, Maryland, United States of America.
Michael F OchsDepartment of Oncology and Health Science Informatics, Johns Hopkins Medical Institutions, Baltimore, Maryland, United States of America.
Joseph A CalifanoDepartment of Otolaryngology-Head and Neck Surgery, Johns Hopkins Medical Institutions, Baltimore, Maryland, United States of America; Milton J. Dance Head and Neck Center, Greater Baltimore Medical Center, Baltimore, Maryland, United States of America.
Wenyue SunDepartment of Otolaryngology-Head and Neck Surgery, Johns Hopkins Medical Institutions, Baltimore, Maryland, United States of America.
Asuragen (United States) · USJohns Hopkins University · USNational Institutes of Health · US

Funding

TUMOR SUPPRESOR GENE PROMOTER HYPERMETHYLATION FOR DETECTION OF HEAD AND NECKP50DE019032 · NIDCR · JOHNS HOPKINS UNIVERSITY · PI SIDRANSKY, DAVID · 2007 to 2016
$27.1M
GENETIC ALTERATIONS AS DIAGNOSTIC AND PROGNOSTIC BIOMARKR01DE013152 · NIDCR · JOHNS HOPKINS UNIVERSITY · PI KOCH, WAYNE M · 1999 to 2013
$5.0M
Integrative Pathway Analysis of Eqigenomic/transcriptional Alteration in HNSCCRC1DE020324 · NIDCR · JOHNS HOPKINS UNIVERSITY · PI CALIFANO, JOSEPH A · 2009 to 2010
$918k
Validation of epigenetic biomarkers of head and neck cancer progression--OLDRC2DE020789 · NIDCR · JOHNS HOPKINS UNIVERSITY · PI CALIFANO, JOSEPH A · 2009 to 2010
$546k
NIDCR NIH HHS NCI P50 DE 019032NIDCR NIH HHS P50 DE019032NIDCR NIH HHS R01 DE013152NIDCR NIH HHS RC1 DE020324NIDCR NIH HHS RC1DE020324NIDCR NIH HHS RC2 DE020789NIDCR NIH HHS RC2DE020789
6 · The paper itself

Abstract

Development of head and neck squamous cell carcinoma (HNSCC) is characterized by accumulation of mutations in several oncogenes and tumor suppressor genes. We have formerly described the mutation pattern of HNSCC and described NOTCH signaling pathway alterations. Given the complexity of the HNSCC, here we extend the previous study to understand the overall HNSCC mutation context and to discover additional genetic alterations. We performed high depth targeted exon sequencing of 51 highly actionable cancer-related genes with a high frequency of mutation across many cancer types, including head and neck. DNA from primary tumor tissues and matched normal tissues was analyzed for 37 HNSCC patients. We identified 26 non-synonymous or stop-gained mutations targeting 11 of 51 selected genes. These genes were mutated in 17 out of 37 (46%) studied HNSCC patients. Smokers harbored 3.2-fold more mutations than non-smokers. Importantly, TP53 was mutated in 30%, NOTCH1 in 8% and FGFR3 in 5% of HNSCC. HPV negative patients harbored 4-fold more TP53 mutations than HPV positive patients. These data confirm prior reports of the HNSCC mutational profile. Additionally, we detected mutations in two new genes, CEBPA and FES, which have not been previously reported in HNSCC. These data extend the spectrum of HNSCC mutations and define novel mutation targets in HNSCC carcinogenesis, especially for smokers and HNSCC without HPV infection.

Indexed as

DNA Mutational AnalysisMutationAdultAgedCarcinoma, Squamous CellHead and Neck NeoplasmsHumansMiddle AgedSquamous Cell Carcinoma of Head and Neck

Identifiers

PMID24667986
PMCPMC3965530
OpenAlexW2020047273

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.