Evidence map›Paper›PMID 24667607›Full record

ArticleBiochemical and biophysical research communications2014

Basic Tilted Helix Bundle - a new protein fold in human FKBP25/FKBP3 and HectD1.

Sara Helander, Meri Montecchio, Alexander Lemak, Christophe Farès, Jonas Almlöf, Yanjun Yi, Adelinda Yee, Cheryl Arrowsmith, Sirano DhePaganon, Maria Sunnerhagen

Abstract read
In one paragraph

Article in Biochemical and biophysical research communications, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 16 citations in OpenAlex.

  1. Review
  2. Review
  3. FKBP25 Regulates Meiotic Apparatus During Mouse Oocyte Maturation.Frontiers in cell and developmental biology · 2021
    Article
  4. Article
  5. FKBP Ligands-Where We Are and Where to Go?Frontiers in pharmacology · 2018
    Review
  6. Article
  7. Article
  8. Article
  9. Crystal structure of the FK506 binding domain of human FKBP25 in complex with FK506.Protein science : a publication of the Protein Society · 2016
    Article
  10. Prolyl isomerases in gene transcription.Biochimica et biophysica acta · 2015
    Review
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 2 countries.

Sara Helander *Department of Physics, Chemistry and Biology, Division of Chemistry, Linköping University, SE-58183 Linköping, Sweden.
Meri Montecchio *Department of Physics, Chemistry and Biology, Division of Chemistry, Linköping University, SE-58183 Linköping, Sweden.
Alexander LemakNortheast Structural Genomics Consortium and Ontario Cancer Institute, University Health Network, Toronto, Ontario, Canada.
Christophe FarèsNortheast Structural Genomics Consortium and Ontario Cancer Institute, University Health Network, Toronto, Ontario, Canada.
Jonas AlmlöfDepartment of Physics, Chemistry and Biology, Division of Chemistry, Linköping University, SE-58183 Linköping, Sweden.
Yanjun YiStructural Genomics Consortium, Northeast Structural Genomics Consortium, Ontario, Canada.
Adelinda YeeNortheast Structural Genomics Consortium and Ontario Cancer Institute, University Health Network, Toronto, Ontario, Canada.
Cheryl ArrowsmithStructural Genomics Consortium, Northeast Structural Genomics Consortium, Ontario, Canada.
Sirano DhePaganonStructural Genomics Consortium, Northeast Structural Genomics Consortium, Ontario, Canada.
Maria SunnerhagenDepartment of Physics, Chemistry and Biology, Division of Chemistry, Linköping University, SE-58183 Linköping, Sweden.
Linköping University · SEStructural Genomics Consortium · CAUniversity of Toronto · CAOntario Institute for Cancer Research · CAPrincess Margaret Cancer Centre · CA

Funding

University of Georgia ProjectU54GM094597 · NIGMS · RUTGERS, THE STATE UNIV OF N.J. · PI ROST, BURKHARD · 2010 to 2014
$36.9M
CIHRNIGMS NIH HHS U54 GM094597Wellcome Trust 092809Wellcome Trust 092809/Z/10/Z
6 · The paper itself

Abstract

In this paper, we describe the structure of a N-terminal domain motif in nuclear-localized FKBP251-73, a member of the FKBP family, together with the structure of a sequence-related subdomain of the E3 ubiquitin ligase HectD1 that we show belongs to the same fold. This motif adopts a compact 5-helix bundle which we name the Basic Tilted Helix Bundle (BTHB) domain. A positively charged surface patch, structurally centered around the tilted helix H4, is present in both FKBP25 and HectD1 and is conserved in both proteins, suggesting a conserved functional role. We provide detailed comparative analysis of the structures of the two proteins and their sequence similarities, and analysis of the interaction of the proposed FKBP25 binding protein YY1. We suggest that the basic motif in BTHB is involved in the observed DNA binding of FKBP25, and that the function of this domain can be affected by regulatory YY1 binding and/or interactions with adjacent domains.

Indexed as

Protein Structure, TertiaryAmino Acid SequenceHumansModels, MolecularNuclear Magnetic Resonance, BiomolecularProtein Structure, SecondarySequence Homology, Amino AcidTacrolimus Binding ProteinsUbiquitin-Protein LigasesYY1 Transcription FactorFKBP3 protein, humanHECTD1 protein, humanTacrolimus Binding ProteinsUbiquitin-Protein LigasesYY1 protein, humanYY1 Transcription FactorFKBP25FKBP3HectD1ImmunophillinsNMR structureStructural genomicsYY1

Identifiers

PMID24667607
PMCPMC4116274
OpenAlexW1978477818

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.