Evidence map›Paper›PMID 24666668›Full record

ArticleBMC genetics2014

Genome-wide association study for intramuscular fat deposition and composition in Nellore cattle.

Aline S M Cesar, Luciana C A Regitano, Gerson B Mourão, Rymer R Tullio, Dante P D Lanna, Renata T Nassu, Maurício A Mudado, Priscila S N Oliveira, Michele L do Nascimento, Amália S Chaves and 5 more

Open access · diamondAbstract read
In one paragraph

Article in BMC genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 69 papers.

0numbers the graph read from it
0cells of the map it votes in
69citing papers in PubMed
10.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

69 citing papers in PubMed, 156 citations in OpenAlex.

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9 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 6 institutions in 2 countries.

Aline S M Cesar
Luciana C A Regitano
Gerson B Mourão
Rymer R Tullio
Dante P D Lanna
Renata T Nassu
Maurício A Mudado
Priscila S N Oliveira
Michele L do Nascimento
Amália S Chaves
Maurício M Alencar
Tad S Sonstegard
Dorian J Garrick
James M Reecy
Luiz L CoutinhoDepartment of Animal Science, University of São Paulo, Piracicaba SP 13418-900, Brazil. llcoutinho@usp.br.
Brazilian Agricultural Research Corporation · BRMethodist University of Piracicaba · BRUniversidade de São Paulo · BRIowa State University · USUnited States Department of Agriculture · USUniversidade Federal de São Carlos · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundMeat from Bos taurus and Bos indicus breeds are an important source of nutrients for humans and intramuscular fat (IMF) influences its flavor, nutritional value and impacts human health. Human consumption of fat that contains high levels of monounsaturated fatty acids (MUFA) can reduce the concentration of undesirable cholesterol (LDL) in circulating blood. Different feeding practices and genetic variation within and between breeds influences the amount of IMF and fatty acid (FA) composition in meat. However, it is difficult and costly to determine fatty acid composition, which has precluded beef cattle breeding programs from selecting for a healthier fatty acid profile. In this study, we employed a high-density single nucleotide polymorphism (SNP) chip to genotype 386 Nellore steers, a Bos indicus breed and, a Bayesian approach to identify genomic regions and putative candidate genes that could be involved with deposition and composition of IMF.

resultsTwenty-three genomic regions (1-Mb SNP windows) associated with IMF deposition and FA composition that each explain ≥1% of the genetic variance were identified on chromosomes 2, 3, 6, 7, 8, 9, 10, 11, 12, 17, 26 and 27. Many of these regions were not previously detected in other breeds. The genes present in these regions were identified and some can help explain the genetic basis of deposition and composition of fat in cattle.

conclusionsThe genomic regions and genes identified contribute to a better understanding of the genetic control of fatty acid deposition and can lead to DNA-based selection strategies to improve meat quality for human consumption.

Indexed as

AdiposityAnimalsBayes TheoremBreedingCattleFatty AcidsGenetic Association StudiesMaleMeatMuscle, SkeletalPolymorphism, Single NucleotideQuantitative Trait LociFatty Acids

Identifiers

PMID24666668
PMCPMC4230646
OpenAlexW2075248870

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.