ArticleEvolutionary applications2014
Genotyping by sequencing resolves shallow population structure to inform conservation of Chinook salmon (Oncorhynchus tshawytscha).
Article in Evolutionary applications, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers.
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Who cites it
59 citing papers in PubMed.
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- Whole Genome Sequencing Reveals Substantial Genetic Structure and Evidence of Local Adaptation in Alaskan Red King Crab.Evolutionary applications · 2025Article
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- Genotyping-by-Sequencing Strategy for Integrating Genomic Structure, Diversity and Performance of Various Japanese Quail (Animals : an open access journal from MDPI · 2023Article
- Genome-wide data suggest a revision in management of the Caspian Sea trout Salmo caspius.PloS one · 2023Article
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- Neutral and adaptive loci reveal fine-scale population structure inEcology and evolution · 2022Article
- Integration of Morphometrics and Machine Learning Enables Accurate Distinction between Wild and Farmed Common Carp.Life (Basel, Switzerland) · 2022Article
- Genome-wide analysis reveals the genetic stock structure of hoki (Evolutionary applications · 2021Article
- Hierarchical genetic structure and implications for conservation of the world's largest salmonid, Hucho taimen.Scientific reports · 2021Article
- Genome-wide SNPs redefines species boundaries and conservation units in the freshwater mussel genus Cyprogenia of North America.Scientific reports · 2021Article
- Mixed-stock analysis using Rapture genotyping to evaluate stock-specific exploitation of a walleye population despite weak genetic structure.Evolutionary applications · 2021Article
- Mating system evolution and genetic structure of diploid sexual populations of Cyrtomium falcatum in Japan.Scientific reports · 2021Article
- Population genomics for wildlife conservation and management.Molecular ecology · 2021Review
- Genome-Wide SNP Discovery and Population Genetic Analysis ofFrontiers in genetics · 2021Article
- Single-Stream Recycling Inspires Selective Fish Passage Solutions for the Connectivity Conundrum in Aquatic Ecosystems.Bioscience · 2020Article
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Authors and funding
6 authors.
Funding
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Abstract
Recent advances in population genomics have made it possible to detect previously unidentified structure, obtain more accurate estimates of demographic parameters, and explore adaptive divergence, potentially revolutionizing the way genetic data are used to manage wild populations. Here, we identified 10 944 single-nucleotide polymorphisms using restriction-site-associated DNA (RAD) sequencing to explore population structure, demography, and adaptive divergence in five populations of Chinook salmon (Oncorhynchus tshawytscha) from western Alaska. Patterns of population structure were similar to those of past studies, but our ability to assign individuals back to their region of origin was greatly improved (>90% accuracy for all populations). We also calculated effective size with and without removing physically linked loci identified from a linkage map, a novel method for nonmodel organisms. Estimates of effective size were generally above 1000 and were biased downward when physically linked loci were not removed. Outlier tests based on genetic differentiation identified 733 loci and three genomic regions under putative selection. These markers and genomic regions are excellent candidates for future research and can be used to create high-resolution panels for genetic monitoring and population assignment. This work demonstrates the utility of genomic data to inform conservation in highly exploited species with shallow population structure.
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