Evidence map›Paper›PMID 24665109›Full record

ArticleAnnals of botany2014

Arabidopsis PECTIN METHYLESTERASE17 is co-expressed with and processed by SBT3.5, a subtilisin-like serine protease.

Fabien Sénéchal, Lucile Graff, Ogier Surcouf, Paulo Marcelo, Catherine Rayon, Sophie Bouton, Alain Mareck, Gregory Mouille, Annick Stintzi, Herman Höfte and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Annals of botany, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed, 1 pooled it
6.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 1 synthesis or guideline pooled it, 113 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Review
  4. CmbZIP11 regulatesHorticulture research · 2026
    Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Proteolysis in plant immunity.The Plant cell · 2024
    Review
  10. Review
  11. Article
  12. Article
  13. Article
  14. Review
  15. Auxin as an architect of the pectin matrix.Journal of experimental botany · 2023
    Review
  16. Article
  17. Article
  18. Article
  19. Genetic architecture of the response ofFrontiers in plant science · 2023
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 2 countries.

Fabien SénéchalEA3900-BIOPI Biologie des Plantes et Innovation, Université de Picardie, 33 Rue St Leu, F-80039 Amiens, France.
Lucile GraffUniversität Hohenheim, Institut für Physiologie und Biotechnologie der Pflanzen (260), D-70593 Stuttgart, Germany.
Ogier SurcoufEA4358-Glyco-MEV, IFRMP 23, Université de Rouen, F-76821 Mont-Saint-Aignan, France.
Paulo MarceloICAP, UPJV, 1-3 Rue des Louvels, F-80037 Amiens, France.
Catherine RayonEA3900-BIOPI Biologie des Plantes et Innovation, Université de Picardie, 33 Rue St Leu, F-80039 Amiens, France.
Sophie BoutonEA3900-BIOPI Biologie des Plantes et Innovation, Université de Picardie, 33 Rue St Leu, F-80039 Amiens, France.
Alain MareckEA4358-Glyco-MEV, IFRMP 23, Université de Rouen, F-76821 Mont-Saint-Aignan, France.
Gregory MouilleIJPB, UMR1318 INRA-AgroParisTech, Bâtiment 2, INRA Centre de Versailles-Grignon, Route de St Cyr (RD 10), F-78026 Versailles, France.
Annick StintziUniversität Hohenheim, Institut für Physiologie und Biotechnologie der Pflanzen (260), D-70593 Stuttgart, Germany.
Herman HöfteIJPB, UMR1318 INRA-AgroParisTech, Bâtiment 2, INRA Centre de Versailles-Grignon, Route de St Cyr (RD 10), F-78026 Versailles, France.
Patrice LerougeEA4358-Glyco-MEV, IFRMP 23, Université de Rouen, F-76821 Mont-Saint-Aignan, France.
Andreas SchallerUniversität Hohenheim, Institut für Physiologie und Biotechnologie der Pflanzen (260), D-70593 Stuttgart, Germany.
Jérôme PellouxEA3900-BIOPI Biologie des Plantes et Innovation, Université de Picardie, 33 Rue St Leu, F-80039 Amiens, France jerome.pelloux@u-picardie.fr.
Université de Picardie Jules Verne · FRUniversity of Hohenheim · DEAgroParisTech · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

BACKGROUND AND

aimsIn Arabidopsis thaliana, the degree of methylesterification (DM) of homogalacturonans (HGs), the main pectic constituent of the cell wall, can be modified by pectin methylesterases (PMEs). In all organisms, two types of protein structure have been reported for PMEs: group 1 and group 2. In group 2 PMEs, the active part (PME domain, Pfam01095) is preceded by an N-terminal extension (PRO part), which shows similarities to PME inhibitors (PMEI domain, Pfam04043). This PRO part mediates retention of unprocessed group 2 PMEs in the Golgi apparatus, thus regulating PME activity through a post-translational mechanism. This study investigated the roles of a subtilisin-type serine protease (SBT) in the processing of a PME isoform.

methodsUsing a combination of functional genomics, biochemistry and proteomic approaches, the role of a specific SBT in the processing of a group 2 PME was assessed together with its consequences for plant development. KEY

resultsA group 2 PME, AtPME17 (At2g45220), was identified, which was highly co-expressed, both spatially and temporally, with AtSBT3.5 (At1g32940), a subtilisin-type serine protease (subtilase, SBT), during root development. PME activity was modified in roots of knockout mutants for both proteins with consequent effects on root growth. This suggested a role for SBT3.5 in the processing of PME17 in planta. Using transient expression in Nicotiana benthamiana, it was indeed shown that SBT3.5 can process PME17 at a specific single processing motif, releasing a mature isoform in the apoplasm.

conclusionsBy revealing the potential role of SBT3.5 in the processing of PME17, this study brings new evidence of the complexity of the regulation of PMEs in plants, and highlights the need for identifying specific PME-SBT pairs.

Indexed as

Gene Expression Regulation, PlantProtein Processing, Post-TranslationalAmino Acid SequenceArabidopsisArabidopsis ProteinsCarboxylic Ester HydrolasesCell WallGene Knockout TechniquesIsoenzymesMolecular Sequence DataMutationNicotianaOrgan SpecificityPectinsPlants, Genetically ModifiedPromoter Regions, GeneticArabidopsis ProteinsCarboxylic Ester HydrolasesIsoenzymespectinesterasePectinsPME17 protein, ArabidopsisRecombinant Fusion ProteinsSBT3.5 protein, ArabidopsisSubtilisinsArabidopsis thalianaco-expressiongene expressionpectinpectin methylesteraseplant cell wallsPMEpost-translational modificationprotein processingSBTsubtilasesubtilisin-like serine protease

Identifiers

PMID24665109
PMCPMC4195543
OpenAlexW2096248209

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.