Evidence map›Paper›PMID 24664689›Full record

ArticleAdvances in experimental medicine and biology2014

Application of next-generation sequencing to identify genes and mutations causing autosomal dominant retinitis pigmentosa (adRP).

Stephen P Daiger, Sara J Bowne, Lori S Sullivan, Susan H Blanton, George M Weinstock, Daniel C Koboldt, Robert S Fulton, David Larsen, Peter Humphries, Marian M Humphries and 3 more

Open access · greenAbstract read
In one paragraph

Article in Advances in experimental medicine and biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
9.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 47 citations in OpenAlex.

  1. A Novel Autosomal Recessive Variant of theDiagnostics (Basel, Switzerland) · 2022
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  16. A dominant mutation in hexokinase 1 (HK1) causes retinitis pigmentosa.Investigative ophthalmology & visual science · 2014
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 2 countries.

Stephen P DaigerHuman Genetics Center, School of Public Health, Univ. of Texas HSC, 1200 Herman Pressler Dr., 77030, Houston, TX, USA, Stephen.P.Daiger@uth.tmc.edusss.
Sara J Bowne
Lori S Sullivan
Susan H Blanton
George M Weinstock
Daniel C Koboldt
Robert S Fulton
David Larsen
Peter Humphries
Marian M Humphries
Eric A Pierce
Rui Chen
Yumei Li
Washington University in St. Louis · USThe University of Texas Health Science Center at Houston · USBaylor College of Medicine · USTrinity College Dublin · IEMassachusetts Eye and Ear Infirmary · USUniversity of Miami · US

Funding

Precision Medicine for Inherited Retinal DegenerationsR01EY012910 · NEI · UNIVERSITY OF PENNSYLVANIA · PI Eric A Pierce · 1999 to 2026
$15.9M
DNA LINKAGE STUDIES OF DEGENERATIVE RETINAL DISEASESR01EY007142 · NEI · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI DAIGER, STEPHEN P · 1989 to 2017
$4.1M
NEI NIH HHS EY007142NEI NIH HHS R01 EY007142NEI NIH HHS R01 EY012910
6 · The paper itself

Abstract

The goal of our research is to identify genes and mutations causing autosomal dominant retinitis pigmentosa (adRP). For this purpose we established a cohort of more than 250 independently ascertained families with adRP in the Houston Laboratory for Molecular Diagnosis of Inherited Eye Diseases. Affected members of each family were screened for disease-causing mutations in genes and gene regions that are commonly associated with adRP. By this approach, we detected mutations in 65 % of the families, leaving 85 families that are likely to harbor mutations outside of the "common" regions or in novel genes. Of these, 32 families were tested by several types of next-generation sequencing (NGS), including (a) targeted polymerase chain reaction (PCR) NGS, (b) whole exome NGS, and (c) targeted retinal-capture NGS. We detected mutations in 11 of these families (31 %) bringing the total detected in the adRP cohort to 70 %. Several large families have also been tested for linkage using Afymetrix single nucleotide polymorphism (SNP) arrays.

Indexed as

Genetic LinkageEye ProteinsFemaleGenes, DominantHigh-Throughput Nucleotide SequencingHumansMalePedigreePrevalenceRetinitis PigmentosaEye Proteins

Identifiers

PMID24664689
PMCPMC4121110
OpenAlexW80551863

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.