ArticleFunctional & integrative genomics2014
Genome-wide analysis of water-stress-responsive microRNA expression profile in tobacco roots.
Article in Functional & integrative genomics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
21 citing papers in PubMed, 58 citations in OpenAlex.
- Integrated miRNA and mRNA Transcriptome Analysis Reveals Regulatory Mechanisms in the Response of WinterInternational journal of molecular sciences · 2024Article
- Regulatory network established by transcription factors transmits drought stress signals in plant.Stress biology · 2022Review
- Identification of novel drought-responsive miRNA regulatory network of drought stress response in common vetch (Open life sciences · 2021Article
- A Dual Strategy of Breeding for Drought Tolerance and Introducing Drought-Tolerant, Underutilized Crops into Production Systems to Enhance Their Resilience to Water Deficiency.Plants (Basel, Switzerland) · 2020Review
- Genome-Wide microRNA Profiling Using Oligonucleotide Microarray Reveals Regulatory Networks of microRNAs inViruses · 2020Article
- Comparative transcriptome study of switchgrass (Biotechnology for biofuels · 2020Article
- Integrative transcriptome, proteome, and microRNA analysis reveals the effects of nitrogen sufficiency and deficiency conditions on theanine metabolism in the tea plant (Horticulture research · 2020Article
- Integration of mRNA and miRNA Analysis Reveals the Molecular Mechanism Underlying Salt and Alkali Stress Tolerance in Tobacco.International journal of molecular sciences · 2019Article
- Bioinformatic Exploration of the Targets of Xylem Sap miRNAs in Maize under Cadmium Stress.International journal of molecular sciences · 2019Article
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- Combinations of Small RNA, RNA, and Degradome Sequencing Uncovers the Expression Pattern of microRNA⁻mRNA Pairs Adapting to Drought Stress in Leaf and Root ofInternational journal of molecular sciences · 2018Article
- A novel gene of Kalanchoe daigremontiana confers plant drought resistance.Scientific reports · 2018Article
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- Article
- Drought stress-induced changes of microRNAs in diploid and autotetraploidGenes & genomics · 2017Article
- Small RNA and degradome deep sequencing reveals drought-and tissue-specific micrornas and their important roles in drought-sensitive and drought-tolerant tomato genotypes.Plant biotechnology journal · 2016Article
- Topological characteristics of target genes regulated by abiotic-stress-responsible miRNAs in a rice interactome network.Functional & integrative genomics · 2016Article
- OMICS Technologies and Applications in Sugar Beet.Frontiers in plant science · 2016Review
- Promoter methylation regulates the abundance of osa-miR393a in contrasting rice genotypes under salinity stress.Functional & integrative genomics · 2016Article
- Genome-wide identification and analysis of drought-responsive genes and microRNAs in tobacco.International journal of molecular sciences · 2015Article
Corrections and comments
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Authors and funding
12 authors at 4 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
MicroRNAs (miRNAs) play a pivotal role in post-transcriptional regulation of gene expression in plants. In this study, we investigate miRNAs in an agronomically important common tobacco in China, named Honghua Dajinyuan (a drought-tolerant cultivar). Here, we report a comprehensive analysis of miRNA expression profiles in mock-treat grown (CK) and 20 % polyethylene glycol-grown (PEG-grown) tobacco roots using a high-throughput sequencing approach. A total of 656 unique miRNAs representing 53 miRNA families were identified in the two libraries, of which 286 unique miRNAs representing 162 microRNAs were differentially expressed. In addition, nine differentially expressed microRNAs selected from different expressed miRNA family with high abundance were subjected to further analysis and validated by quantitative real-time PCR (Q-PCR). In addition, the expression pattern of these identified candidate conserved miRNA and target genes of three identified miRNA (nta-miR172b, nta-miR156i, and nta-miR160a) were also validated by Q-PCR. Gene ontology (GO) enrichment analysis suggests that the putative target genes of these differentially expressed miRNAs are involved in metabolic process and response to stimulus. In particular, 25 target genes are involved in regulating plant hormone signal transduction and metabolism, indicating that these association microRNAs may play important regulatory roles in responding to PEG resistance. Moreover, this study adds a significant number of novel miRNAs to the tobacco miRNome.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.