Evidence map›Paper›PMID 24663087›Full record

ArticleInternational journal of molecular sciences2014

Identification of proteins of altered abundance in oil palm infected with Ganoderma boninense.

Jameel R Al-Obaidi, Yusmin Mohd-Yusuf, Nurhanani Razali, Jaime Jacqueline Jayapalan, Chin-Chong Tey, Normahnani Md-Noh, Sarni Mat Junit, Rofina Yasmin Othman, Onn Haji Hashim

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Review
  3. An In-Depth Study of PhytopathogenicJournal of fungi (Basel, Switzerland) · 2024
    Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. Identification ofG3 (Bethesda, Md.) · 2017
    Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Jameel R Al-ObaidiAgro-Biotechnology Malaysia Institutes, c/o MARDI Headquarters, Serdang 43400, Selangor, Malaysia. yusmin_y@um.edu.my.
Yusmin Mohd-YusufCentre for Foundation Studies in Science, University of Malaya, Kuala Lumpur 50603, Malaysia. yasmin@um.edu.my.
Nurhanani RazaliDepartment of Molecular Medicine, Faculty of Medicine, University of Malaya, Kuala Lumpur 50603, Malaysia. hanani@um.edu.my.
Jaime Jacqueline JayapalanUniversity of Malaya Centre for Proteomics Research (UMCPR), University of Malaya, Kuala Lumpur 50603, Malaysia. jaime_jacklyn@um.edu.my.
Chin-Chong TeyPlant Protection Unit, Sime Darby Sdn Bhd, Km 10, Jalan Banting Kelanang, P.O. Box 207, Banting 42100, Selangor, Malaysia. tchinchong@yahoo.com.
Normahnani Md-NohPlant Protection Unit, Sime Darby Sdn Bhd, Km 10, Jalan Banting Kelanang, P.O. Box 207, Banting 42100, Selangor, Malaysia. nanniiez82@gmail.com.
Sarni Mat JunitDepartment of Molecular Medicine, Faculty of Medicine, University of Malaya, Kuala Lumpur 50603, Malaysia. jaime_jacklyn@um.edu.my.
Rofina Yasmin OthmanCentre for Research in Biotechnology for Agriculture, University of Malaya, Kuala Lumpur 50603, Malaysia. yasmin@um.edu.my.
Onn Haji HashimDepartment of Molecular Medicine, Faculty of Medicine, University of Malaya, Kuala Lumpur 50603, Malaysia. onnhashim@um.edu.my.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Basal stem rot is a common disease that affects oil palm, causing loss of yield and finally killing the trees. The disease, caused by fungus Ganoderma boninense, devastates thousands of hectares of oil palm plantings in Southeast Asia every year. In the present study, root proteins of healthy oil palm seedlings, and those infected with G. boninense, were analyzed by 2-dimensional gel electrophoresis (2-DE). When the 2-DE profiles were analyzed for proteins, which exhibit consistent significant change of abundance upon infection with G. boninense, 21 passed our screening criteria. Subsequent analyses by mass spectrometry and database search identified caffeoyl-CoA O-methyltransferase, caffeic acid O-methyltransferase, enolase, fructokinase, cysteine synthase, malate dehydrogenase, and ATP synthase as among proteins of which abundances were markedly altered.

Indexed as

ArecaceaeCysteine SynthaseElectrophoresis, Gel, Two-DimensionalFructokinasesGanodermaHost-Pathogen InteractionsMalate DehydrogenaseMethyltransferasesPhosphopyruvate HydratasePlant DiseasesPlant ProteinsPlant RootsProteomicsProton-Translocating ATPasesTandem Mass Spectrometrycaffeate O-methyltransferasecaffeoyl-CoA O-methyltransferaseCysteine SynthasefructokinaseFructokinasesMalate DehydrogenaseMethyltransferasesPhosphopyruvate HydratasePlant ProteinsProton-Translocating ATPases

Identifiers

PMID24663087
PMCPMC3975447

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.